Author details

Full Name

Lukas Reiter

Affiliation

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37775337	Substantial downregulation of mitochondrial and peroxisomal proteins during acute kidney injury revealed by data-independent acquisition proteomics.	Proteomics	2024
36526727	Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications.	Nat Protoc	2023
36178621	Limited Proteolysis-Mass Spectrometry to Identify Metabolite-Protein Interactions.	Methods Mol Biol	2023
36653529	Author Correction: Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications.	Nat Protoc	2023
37018319	MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale.	J Proteome Res	2023
36865241	Substantial Downregulation of Mitochondrial and Peroxisomal Proteins during Acute Kidney Injury revealed by Data-Independent Acquisition Proteomics.	bioRxiv	2023
34637924	Low risk of contrast media-induced hypersensitivity reactions in all subtypes of systemic mastocytosis.	Annals of Allergy, Asthma and Immunology	2022
35842429	Compounds activating VCP D1 ATPase enhance both autophagic and proteasomal neurotoxic protein clearance.	Nature Communications	2022
36224378	Global, in situ analysis of the structural proteome in individuals with Parkinson's disease to identify a new class of biomarker.	Nat Struct Mol Biol	2022
35605973	Biomarker Candidates for Tumors Identified from Deep-Profiled Plasma Stem Predominantly from the Low Abundant Area.	Journal of Proteome Research	2022
34798331	MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets.	Mol Cell Proteomics	2022
34955012	Mechanistic Insights into a CDK9 Inhibitor Via Orthogonal Proteomics Methods.	ACS Chemical Biology	2022
34060083	Clinical and histopathological features of myeloid neoplasms with concurrent Janus kinase 2 (JAK2) V617F and KIT proto-oncogene, receptor tyrosine kinase (KIT) D816V mutations.	Br J Haematol	2021
33806359	Adverse Prognostic Impact of the D816V Transcriptional Activity in Advanced Systemic Mastocytosis.	International Journal of Molecular Sciences	2021
32929271	MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets.	Nat Methods	2020
32422371	Importance of Adequate Diagnostic Workup for Correct Diagnosis of Advanced Systemic Mastocytosis.	Journal of Allergy and Clinical Immunology: In Practice	2020
31738065	Systematic Comparison of Strategies for the Enrichment of Lysosomes by Data Independent Acquisition.	Journal of Proteome Research	2020
31888964	Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition.	Mol Cell Proteomics	2020
32175694	Isoform-resolved correlation analysis between mRNA abundance regulation and protein level degradation.	Mol Syst Biol	2020
32290654	Revealing Dynamic Protein Acetylation across Subcellular Compartments.	Journal of Proteome Research	2020
32034161	Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries.	Nature Communications	2020
32826910	A machine learning-based chemoproteomic approach to identify drug targets and binding sites in complex proteomes.	Nat Commun	2020
30948622	Analysis of 1508 Plasma Samples by Capillary-Flow Data-Independent Acquisition Profiles Proteomics of Weight Loss and Maintenance.	Molecular and Cellular Proteomics	2019
31844046	Classification of mouse B cell types using surfaceome proteotype maps.	Nat Commun	2019
30450913	MSstatsQC 2.0: R/Bioconductor Package for Statistical Quality Control of Mass Spectrometry-Based Proteomics Experiments.	J Proteome Res	2019
30651306	Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry.	Mol Cell Proteomics	2019
31465043	Surpassing 10â¿¿000 identified and quantified proteins in a single run by optimizing current LC-MS instrumentation and data analysis strategy.	Molecular Omics	2019
30726097	Comparison of Protein Quantification in a Complex Background by DIA and TMT Workflows with Fixed Instrument Time.	J Proteome Res	2019
29531254	Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition.	Sci Rep	2018
29052237	The taxonomic composition of the donor intestinal microbiota is a major factor influencing the efficacy of faecal microbiota transplantation in therapy refractory ulcerative colitis.	Alimentary Pharmacology and Therapeutics	2018
29237681	Plasma Proteomics for Epidemiology: Increasing Throughput With Standard-Flow Rates.	Circulation: Cardiovascular Genetics	2017
28825704	Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses.	Nat Methods	2017
28428241	WITHDRAWN: Heralds of parallel MS: Data-independent acquisition surpassing sequential identification of data dependent acquisition in proteomics.	Molecular and Cellular Proteomics	2017
28319648	New targeted approaches for the quantification of data-independent acquisition mass spectrometry.	Proteomics	2017
29070702	Optimization of Experimental Parameters in Data-Independent Mass Spectrometry Significantly Increases Depth and Reproducibility of Results.	Molecular and Cellular Proteomics	2017
27701404	A multicenter study benchmarks software tools for label-free proteome quantification.	Nat Biotechnol	2016
27134190	Primary resistance of Helicobacter pylori is still low in Southern Austria.	International Journal of Medical Microbiology	2016
27213465	High-precision iRT prediction in the targeted analysis of data-independent acquisition and its impact on identification and quantitation.	Proteomics	2016
26423119	Advancing Urinary Protein Biomarker Discovery by Data-Independent Acquisition on a Quadrupole-Orbitrap Mass Spectrometer.	J Proteome Res	2015
25724911	Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues.	Mol Cell Proteomics	2015
25561506	Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry.	Mol Cell Proteomics	2015
26120868	Quantification of SAHA-Dependent Changes in Histone Modifications Using Data-Independent Acquisition Mass Spectrometry.	Journal of Proteome Research	2015
24443746	Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach.	Mol Cell Proteomics	2014
23334424	A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis.	Nature	2013
22261725	Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis.	Mol Cell Proteomics	2012
22577012	Using iRT, a normalized retention time for more targeted measurement of peptides.	Proteomics	2012
22454234	RIP-chip-SRM--a new combinatorial large-scale approach identifies a set of translationally regulated bantam/miR-58 targets in C. elegans.	Genome Res	2012
22057310	Generic comparison of protein inference engines.	Mol Cell Proteomics	2012
21718813	IPM: An integrated protein model for false discovery rate estimation and identification in high-throughput proteomics.	J Proteomics	2011
21283140	Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics.	Mol Syst Biol	2011