Author details

Full Name

Dinesh K Barupal

Affiliation

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37034715	IDSL.GOA: Gene Ontology Analysis for Interpreting Metabolomic datasets.	bioRxiv	2024
37694774	Identification of pre-diagnostic lipid sets associated with liver cancer risk using untargeted lipidomics and chemical set analysis: A nested case-control study within the ATBC cohort.		2024
36781127	In utero metabolomic signatures of refined grain intake and risk of gestational diabetes: A metabolome-wide association study.	Am J Clin Nutr	2023
37753190	PFAS Exposures and the Human Metabolome: A Systematic Review of Epidemiological Studies.	Curr Pollut Rep	2023
37623890	Sexual Dimorphism of the Mouse Plasma Metabolome Is Associated with Phenotypes of 30 Gene Knockout Lines.	Metabolites	2023
37311059	IDSL.CSA: Composite Spectra Analysis for Chemical Annotation of Untargeted Metabolomics Datasets.		2023
36798308	IDSL.CSA: Composite Spectra Analysis for Chemical Annotation of Untargeted Metabolomics Datasets.		2023
34921852	Comparison of untargeted and targeted perfluoroalkyl acids measured in adolescent girls.		2022
35461097	CCDB: A database for exploring inter-chemical correlations in metabolomics and exposomics datasets.	Environment international	2022
35393526	An Amish founder population reveals rare-population genetic determinants of the human lipidome.	Commun Biol	2022
35579321	IDSL.IPA Characterizes the Organic Chemical Space in Untargeted LC/HRMS Data Sets.	Journal of Proteome Research	2022
35887252	Metabolomic Evidence for Peroxisomal Dysfunction in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome.	Int J Mol Sci	2022
36137231	IDSL.UFA Assigns High-Confidence Molecular Formula Annotations for Untargeted LC/HRMS Data Sets in Metabolomics and Exposomics.	Analytical Chemistry	2022
36330107	Response: Commentary: Data processing thresholds for abundance and sparsity and missed biological insights in an untargeted chemical analysis of blood specimens for exposomics.	Frontiers in Public Health	2022
35532743	Predictive Metabolomic Markers in Early to Mid-pregnancy for Gestational Diabetes Mellitus: A Prospective Test and Validation Study.	Diabetes	2022
36483216	An actionable annotation scoring framework for gas chromatography-high-resolution mass spectrometry.	Exposome	2022
37064049	Serum unsaturated phosphatidylcholines predict longitudinal basal forebrain degeneration in Alzheimer's disease.		2022
34836252	Genomics of Postprandial Lipidomics in the Genetics of Lipid-Lowering Drugs and Diet Network Study.	Nutrients	2021
34178917	Data Processing Thresholds for Abundance and Sparsity and Missed Biological Insights in an Untargeted Chemical Analysis of Blood Specimens for Exposomics.	Frontiers in Public Health	2021
33984576	Prioritizing cancer hazard assessments for IARC Monographs using an integrated approach of database fusion and text mining.	Environment international	2021
33169034	Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data.	Nat Biotechnol	2021
31386148	Perspective: Dietary Biomarkers of Intake and Exposure-Exploration with Omics Approaches.	Adv Nutr	2020
32358220	Serum triglycerides in Alzheimer disease: Relation to neuroimaging and CSF biomarkers.	Neurology	2020
31947545	Comprehensive Circulatory Metabolomics in ME/CFS Reveals Disrupted Metabolism of Acyl Lipids and Steroids.	Metabolites	2020
32390414	Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolomics.	Anal Chem	2020
32766476	Functional Microbiomics Reveals Alterations of the Gut Microbiome and Host Co-Metabolism in Patients With Alcoholic Hepatitis.	Hepatol Commun	2020
32586392	A lipidome-wide association study of the lipoprotein insulin resistance index.	Lipids Health Dis	2020
32775832	A Pilot Study on the Effect of Prebiotic on Host-Microbial Co-metabolism in Peritoneal Dialysis Patients.	Kidney International Reports	2020
30731143	Metabolomic analysis of serum and myocardium in compensated heart failure after myocardial infarction.	Life Sciences	2019
31557052	Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach.	Environ Health Perspect	2019
31231467	Prioritization of metabolic genes as novel therapeutic targets in estrogen-receptor negative breast tumors using multi-omics data and text mining.	Oncotarget	2019
30758187	Systematic Error Removal Using Random Forest for Normalizing Large-Scale Untargeted Lipidomics Data.	Anal Chem	2019
31517024	Sets of coregulated serum lipids are associated with Alzheimer's disease pathophysiology.	Alzheimers Dement (Amst)	2019
31121816	A Comprehensive Plasma Metabolomics Dataset for a Cohort of Mouse Knockouts within the International Mouse Phenotyping Consortium.	Metabolites	2019
29413745	Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets.	Curr Opin Biotechnol	2018
28436590	Identification of small molecules using accurate mass MS/MS search.	Mass Spectrom Rev	2018
30457571	Generation and quality control of lipidomics data for the alzheimer's disease neuroimaging initiative cohort.	Sci Data	2018
29968805	Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics.	Sci Rep	2018
30280600	Arginine reprogramming in ADPKD results in arginine-dependent cystogenesis.		2018
29179034	Effects of exposure to water disinfection by-products in a swimming pool: A metabolome-wide association study.	Environment international	2018
28225587	compMS2Miner: An Automatable Metabolite Identification, Visualization, and Data-Sharing R Package for High-Resolution LC-MS Data Sets.	Analytical Chemistry	2017
28391173	The impact of ambient air pollution on the human blood metabolome.	Environmental Research	2017
29137232	Integration of metabolomics, transcriptomics, and microRNA expression profiling reveals a miR-143-HK2-glucose network underlying zinc-deficiency-associated esophageal neoplasia.	Oncotarget	2017
29109515	Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets.	Sci Rep	2017
28006847	Dietary flavonoid intake and colorectal cancer risk in the European prospective investigation into cancer and nutrition (EPIC) cohort.	International Journal of Cancer	2017
28141874	Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration.	PLoS One	2017
27788581	Environmental Tobacco Smoke Alters Metabolic Systems in Adult Rats.	Chem Res Toxicol	2016
27164621	Prioritizing Chemicals for Risk Assessment Using Chemoinformatics: Examples from the IARC Monographs on Pesticides.	Environmental Health Perspectives	2016
26310602	Systematic analysis of the polyphenol metabolome using the Phenol-Explorer database.	Molecular Nutrition and Food Research	2016
26238458	Alteration of amino acid and biogenic amine metabolism in hepatobiliary cancers: Findings from a prospective cohort study.	Int J Cancer	2016