Author details

Full Name

Jeffrey R Moffitt

Affiliation

Harvard Medical School

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

Emma Lundberg (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36778396	Microbiome induced complement synthesized in the gut protects against enteric infections.	bioRxiv	2023
37582959	Spatial organization of the mouse retina at single cell resolution by MERFISH.	Nat Commun	2023
37369340	Spatial enrichment of the type 1 interferon signature in the brain of a neuropsychiatric lupus murine model.	Brain Behav Immun	2023
34650268	Cell segmentation in imaging-based spatial transcriptomics.	Nat Biotechnol	2022
35859028	The emerging landscape of spatial profiling technologies.	Nat Rev Genet	2022
32051591	MAFG-driven astrocytes promote CNS inflammation.	Nature	2020
31118500	Multiplexed detection of RNA using MERFISH and branched DNA amplification.	Sci Rep	2019
29670197	Author Correction: Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy.	Sci Rep	2018
30385464	Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region.	Science	2018
29555914	Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy.	Sci Rep	2018
29083401	High-throughput, image-based screening of pooled genetic-variant libraries.	Nat Methods	2017
26760202	Super-resolution imaging reveals distinct chromatin folding for different epigenetic states.	Nature	2016
27625426	High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization.	Proc Natl Acad Sci U S A	2016
27911841	High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing.	Proc Natl Acad Sci U S A	2016
27241748	RNA Imaging with Multiplexed Error-Robust Fluorescence In Situ Hybridization (MERFISH).	Methods Enzymol	2016
27198188	Spatial organization shapes the turnover of a bacterial transcriptome.	Elife	2016
27445307	Spatial organization of chromatin domains and compartments in single chromosomes.	Science	2016
25858977	RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.	Science	2015
24428386	Extracting signal from noise: kinetic mechanisms from a Michaelis-Menten-like expression for enzymatic fluctuations.	FEBS J	2014
24912163	Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging.	Proc Natl Acad Sci U S A	2014
24664051	Simultaneous dual-color 3D STED microscopy.	Opt Express	2014
23661759	Robust circadian oscillations in growing cyanobacteria require transcriptional feedback.	Science	2013
24514370	Fast compressed sensing analysis for super-resolution imaging using L1-homotopy.	Opt Express	2013
23874187	Statistical analysis of molecular signal recording.	PLoS Comput Biol	2013
22395180	The single-cell chemostat: an agarose-based, microfluidic device for high-throughput, single-cell studies of bacteria and bacterial communities.	Lab Chip	2012
23178121	High degree of coordination and division of labor among subunits in a homomeric ring ATPase.	Cell	2012
21369254	Time-gating improves the spatial resolution of STED microscopy.	Opt Express	2011
21940894	Single-base pair unwinding and asynchronous RNA release by the hepatitis C virus NS3 helicase.	Science	2011
20627160	Methods in statistical kinetics.	Methods Enzymol	2010
20729471	Mechanistic constraints from the substrate concentration dependence of enzymatic fluctuations.	Proc Natl Acad Sci U S A	2010
20452360	Mechanochemistry of a viral DNA packaging motor.	J Mol Biol	2010
19129763	Intersubunit coordination in a homomeric ring ATPase.	Nature	2009
20147062	High-resolution dual-trap optical tweezers with differential detection: an introduction.	Cold Spring Harb Protoc	2009
20147041	High-resolution dual-trap optical tweezers with differential detection: alignment of instrument components.	Cold Spring Harb Protoc	2009
20147040	High-resolution dual-trap optical tweezers with differential detection: minimizing the influence of measurement noise.	Cold Spring Harb Protoc	2009
20147039	High-resolution dual-trap optical tweezers with differential detection: data collection and instrument calibration.	Cold Spring Harb Protoc	2009
20147038	High-resolution dual-trap optical tweezers with differential detection: instrument design.	Cold Spring Harb Protoc	2009
20147037	High-resolution dual-trap optical tweezers with differential detection: managing environmental noise.	Cold Spring Harb Protoc	2009
20416848	DNA based molecular motors.	Phys Life Rev	2009
19794496	Substrate interactions and promiscuity in a viral DNA packaging motor.	Nature	2009
18373360	Exact solutions for kinetic models of macromolecular dynamics.	J Phys Chem B	2008
18307407	Recent advances in optical tweezers.	Annu Rev Biochem	2008
16751267	Differential detection of dual traps improves the spatial resolution of optical tweezers.	Proc Natl Acad Sci U S A	2006
15324148	Self-erasing perturbations of Abelian sandpiles.	Phys Rev E Stat Nonlin Soft Matter Phys	2004

1 - 44 of 44

Douglas P Shepherd

Center for Biological Physics and Department of Physics, Arizona State University

Career Start Year 2013

Number of shared co-authors 1

Sinem K Saka

Wyss Institute for Biologically Inspired Engineering at Harvard University

Career Start Year 2012

Number of shared co-authors 2

Digvijay Singh

University of California San Diego

Career Start Year 2010

Number of shared co-authors 0

Vladislav Belyy

University of California at San Francisco

Career Start Year 2010

Number of shared co-authors 0

Matt Thomson

California Institute of Technology

Career Start Year 2009

Number of shared co-authors 0

Bo Huang

University of California san francisco

Career Start Year 2007

Number of shared co-authors 1

Ibrahim I Cisse

Massachusetts Institute of Technology (MIT)

Career Start Year 2007

Number of shared co-authors 3

Zach Hensel

Universidade NOVA de Lisboa

Career Start Year 2006

Number of shared co-authors 0

Stephan Preibisch

Howard Hughes Medical Institute

Career Start Year 2005

Number of shared co-authors 0

Bin Wu

University of Pennsylvania

Career Start Year 2005

Number of shared co-authors 0

Peng Yin

Wyss Institute for Biologically Inspired Engineering, Harvard University

Career Start Year 2004

Number of shared co-authors 4

Christian Tischer

Center for Bioimage Analysis

Career Start Year 2003

Number of shared co-authors 0

Ge Yang

College of Chemistry, Sichuan University

Career Start Year 2003

Number of shared co-authors 0

Melike Lakadamyali

Center for Engineering Mechanobiology, University of Pennsylvania

Career Start Year 2003

Number of shared co-authors 3

Wei Dai

Yuecheng District Centers for Disease Control and Prevention

Career Start Year 2003

Number of shared co-authors 0

Sean R Collins

University of California davis

Career Start Year 2003

Number of shared co-authors 1

Jay R Unruh

Stowers Institute for Medical Research

Career Start Year 2003

Number of shared co-authors 0

Xiaolin Nan

Oregon Health and Science University

Career Start Year 2002

Number of shared co-authors 0

Yamuna Krishnan

The University of Chicago

Career Start Year 2000

Number of shared co-authors 2

John Aach

Harvard Medical School

Career Start Year 2000

Number of shared co-authors 3

Christophe Zimmer

Institut Pasteur, Universite Paris Cite, France Institut Pasteur

Career Start Year 2000

Number of shared co-authors 1

William J Greenleaf

Stanford University

Career Start Year 1998

Number of shared co-authors 1

Jason Reed

Department of Physics Virginia Commonwealth University Richmond VA USA.

Career Start Year 1995

Number of shared co-authors 0

Florian Mueller

Institut Pasteur, Universite de Paris

Career Start Year 1995

Number of shared co-authors 1

Nicolas Bertin

University Bordeaux, CNRS

Career Start Year 1994

Number of shared co-authors 0

Stephen R Quake

Stanford University

Career Start Year 1994

Number of shared co-authors 3

Koen Visscher

Inscopix Inc.

Career Start Year 1991

Number of shared co-authors 0

Gustavo Stolovitzky

IBM T.J. Watson Research Center

Career Start Year 1990

Number of shared co-authors 2

James G McNally

Institute for Soft Matter and Functional Materials

Career Start Year 1983

Number of shared co-authors 0

Brian D Slaughter

Stowers Institute for Medical Research

Career Start Year 1974

Number of shared co-authors 0

row(s) 1 - 30 of 30

Carlos Bustamante

University of California berkeley

Co-authored papers 17

Xiaowei Zhuang

Howard Hughes Medical Institute, Harvard University

Co-authored papers 14

Alistair N Boettiger

Co-authored papers 3

Brian J Beliveau

Co-authored papers 2

Shixin Liu

The Rockefeller University

Co-authored papers 1

George M Church

Harvard Medical School

Co-authored papers 1

Adam H Marblestone

Astera Institute

Co-authored papers 1

Edward S Boyden

McGovern Institute for Brain Research

Co-authored papers 1

Holger Heyn

Barcelona Institute of Science and Technology, Spain Universitat Pompeu Fabra

Co-authored papers 1

Emily C Tjon

Co-authored papers 1

David A Weitz

Co-authored papers 1

Peter V Kharchenko

Co-authored papers 1

Jiannis Ragoussis

McGill University

Co-authored papers 1

Leonid A Mirny

Co-authored papers 1

Aviv Regev

Broad Institute of MIT and Harvard

Co-authored papers 1

Erin K O'Shea

Howard Hughes Medical Institute

Co-authored papers 1

Karthik Shekhar

Co-authored papers 1

Maxim Imakaev

Co-authored papers 1

Emma Lundberg (CM4AI)

Stanford University

Co-authored papers 1

1 - 19

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