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Author Details

Levi Waldron
City University of New York School of Public Health
2009
97
42
PMIDPaper TitleJournal TitlePublished Year
37697152BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures.Nat Biotechnol2024
37697152BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures.Nat Biotechnol2024
37208161RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.Bioinformatics2023
37624866Curated single cell multimodal landmark datasets for R/Bioconductor.PLoS Comput Biol2023
37208161RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor.Bioinformatics2023
37624866Curated single cell multimodal landmark datasets for R/Bioconductor.PLoS Comput Biol2023
35228751Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma.Nat Med2022
35831907Correction: Refining colorectal cancer classification and clinical stratification through a single-cell atlas.Genome Biol2022
35760813GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.Nat Commun2022
35758795High-sensitivity pattern discovery in large, paired multiomic datasets.Bioinformatics2022
35228751Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma.Nat Med2022
35831907Correction: Refining colorectal cancer classification and clinical stratification through a single-cell atlas.Genome Biol2022
35760813GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases.Nat Commun2022
35758795High-sensitivity pattern discovery in large, paired multiomic datasets.Bioinformatics2022
33432175Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals.Nat Med2021
32026945Toward a gold standard for benchmarking gene set enrichment analysis.Brief Bioinform2021
33619505SARS-CoV-2 incidence and risk factors in a national, community-based prospective cohort of U.S. adults.medRxiv2021
33511368SIMON: Open-Source Knowledge Discovery Platform.Patterns (N Y)2021
33432175Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals.Nat Med2021
34793320Patterns of SARS-CoV-2 Testing Preferences in a National Cohort in the United States: Latent Class Analysis of a Discrete Choice Experiment.JMIR Public Health Surveill2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34784344Multivariable association discovery in population-scale meta-omics studies.PLoS Comput Biol2021
34548354Cohort profile: a national, community-based prospective cohort study of SARS-CoV-2 pandemic outcomes in the USA-the CHASING COVID Cohort study.BMJ Open2021
33619505SARS-CoV-2 incidence and risk factors in a national, community-based prospective cohort of U.S. adults.medRxiv2021
33511368SIMON: Open-Source Knowledge Discovery Platform.Patterns (N Y)2021
34793320Patterns of SARS-CoV-2 Testing Preferences in a National Cohort in the United States: Latent Class Analysis of a Discrete Choice Experiment.JMIR Public Health Surveill2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34548354Cohort profile: a national, community-based prospective cohort study of SARS-CoV-2 pandemic outcomes in the USA-the CHASING COVID Cohort study.BMJ Open2021
34784344Multivariable association discovery in population-scale meta-omics studies.PLoS Comput Biol2021
32026945Toward a gold standard for benchmarking gene set enrichment analysis.Brief Bioinform2021
31392308CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.Bioinformatics2020
32431016"Stoma or no stoma": First report of intestinal transplantation without stoma.Am J Transplant2020
31792435Orchestrating single-cell analysis with Bioconductor.Nat Methods2020
31827272Publisher Correction: Orchestrating single-cell analysis with Bioconductor.Nat Methods2020
31871106The Impact of Stroma Admixture on Molecular Subtypes and Prognostic Gene Signatures in Serous Ovarian Cancer.Cancer Epidemiol Biomarkers Prev2020
32282230Reliable Analysis of Clinical Tumor-Only Whole-Exome Sequencing Data.JCO Clin Cancer Inform2020
32453635Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale.JCO Clin Cancer Inform2020
33315584SARS-CoV-2 Testing Service Preferences of Adults in the United States: Discrete Choice Experiment.JMIR Public Health Surveill2020
33300008Household factors and the risk of severe COVID-like illness early in the US pandemic.medRxiv2020
32747365Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma.Cancer Res2020
32746888Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data.Genome Biol2020
33119407Multiomic Integration of Public Oncology Databases in Bioconductor.JCO Clin Cancer Inform2020
33057217Transparency and reproducibility in artificial intelligence.Nature2020
33398293Patterns of SARS-CoV-2 testing preferences in a national cohort in the United States.medRxiv2020
32995800Testing, Testing: What SARS-CoV-2 testing services do adults in the United States actually want?medRxiv2020
34589897Gut bacterial taxonomic abundances vary with cognition, personality, and mood in the Wisconsin Longitudinal Study.Brain Behav Immun Health2020
30202918The impact of different sources of heterogeneity on loss of accuracy from genomic prediction models.Biostatistics2020
31392308CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.Bioinformatics2020
34589897Gut bacterial taxonomic abundances vary with cognition, personality, and mood in the Wisconsin Longitudinal Study.Brain Behav Immun Health2020
31871106The Impact of Stroma Admixture on Molecular Subtypes and Prognostic Gene Signatures in Serous Ovarian Cancer.Cancer Epidemiol Biomarkers Prev2020
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Collaborators

Curtis Huttenhower
Broad Institute of MIT and Harvard
Co-authored papers 28
Nicola Segata
University of Trento
Co-authored papers 21
Ludwig Geistlinger
Center for Computational Biomedicine, Harvard Medical School
Co-authored papers 20
Marcel Ramos
Graduate School of Public Health and Health Policy, City University of New York
Co-authored papers 16
Martin Morgan
Roswell Park Comprehensive Cancer Center
Co-authored papers 15
Giovanni Parmigiani
Dana Farber Cancer Institute.
Co-authored papers 14
Vincent J Carey
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 12
Markus Riester
Novartis Institutes for BioMedical Research
Co-authored papers 10
Michael J Birrer
Co-authored papers 10
Chloe Mirzayi
City University of New York School of Public Health
Co-authored papers 10
Igor Jurisica
Schroeder Arthritis Institute
Co-authored papers 9
Benjamin Haibe-Kains
Princess Margaret Cancer Centre, University Health Network
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Lucas Schiffer
Boston University
Co-authored papers 7
Francesco Beghini
University of Trento
Co-authored papers 7
Sean Davis
Johns Hopkins School of Medicine, National Cancer Institute, Princeton University, University of Colorado Anschutz Medical Campus, University of Pittsburgh, University of Washington
Co-authored papers 7
Aedin C Culhane
Dana-Farber Cancer Institute & Harvard School of Public Health
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Susan R Davis
Co-authored papers 7
Rimsha Azhar
City University of New York School of Public Health
Co-authored papers 6
Heidi E Jones
City University of New York Institute of Implementation Science and Population Health
Co-authored papers 5
Edoardo Pasolli
University of Naples Federico II
Co-authored papers 5
Audrey Renson
New York University Grossman School of Medicine
Co-authored papers 5
Sehyun Oh
Graduate School of Public Health and Health Policy, City University of New York
Co-authored papers 5
Melania Pintilie
Princess Margaret Cancer Centre, University Health Network
Co-authored papers 5
Fei-Fei Liu
Princess Margaret Cancer Centre, University Health Network, University of Toronto
Co-authored papers 4
Manimozhiyan Arumugam
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen
Co-authored papers 4
Andrew T Chan
Massachusetts General Hospital and Harvard Medical School
Co-authored papers 4
Takuji Yamada
Tokyo Institute of Technology
Co-authored papers 4
Suzanne Kamel-Reid
Toronto General Hospital, University Health Network, University of Toronto
Co-authored papers 4
Bayardo Perez-Ordonez
University Health Network
Co-authored papers 4
Wei Xu
Princess Margaret Cancer Centre
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