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Author Details

Piotr J Balwierz
MRC London Institute of Medical Sciences
2009
24
20
PMIDPaper TitleJournal TitlePublished Year
35789323Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.Nat Genet2022
34242836Identification of novel potential interaction partners of UDP-galactose (SLC35A2), UDP-N-acetylglucosamine (SLC35A3) and an orphan (SLC35A4) nucleotide sugar transporters.J Proteomics2021
33651978Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization.Dev Cell2021
34811400Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics.Sci Rep2021
31924754Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing.Nat Commun2020
30464347Amphioxus functional genomics and the origins of vertebrate gene regulation.Nature2018
24374622An epigenetic profile of early T-cell development from multipotent progenitors to committed T-cell descendants.Eur J Immunol2014
25030899Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways.Nucleic Acids Res2014
24515121ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs.Genome Res2014
24670764A promoter-level mammalian expression atlas.Nature2014
24671955Transcription and enhancer profiling in human monocyte subsets.Blood2014
24671953The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations.Blood2014
22964890Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting.Genome Res2013
23621987Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium.Breast Cancer Res2013
23764001Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming.Cancer Cell2013
23180783SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates.Nucleic Acids Res2013
22388088Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop.Nat Med2012
23028049The corepressor NCoR1 antagonizes PGC-1α and estrogen-related receptor α in the regulation of skeletal muscle function and oxidative metabolism.Mol Cell Biol2012
22688341Adipose tissue microRNAs as regulators of CCL2 production in human obesity.Diabetes2012
20053671The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing.Hum Mol Genet2010
19374773FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions.Genome Biol2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
19680535Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome.PLoS Pathog2009
19624849Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.Genome Biol2009
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Collaborators

Erik van Nimwegen
University of Basel
Co-authored papers 15
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 7
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 7
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 5
Mihaela Zavolan
Co-authored papers 5
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 5
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 4
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Michael Rehli
University Hospital Regensburg
Co-authored papers 4
Ferenc M??ller
University of Birmingham
Co-authored papers 4
Sayaka Nagao-Sato
Ochanomizu University
Co-authored papers 3
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
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Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 3
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 3
Matthias Edinger
Regensburg University Hospital
Co-authored papers 3
Christian Schmidl
Leibniz Institute for Immunotherapy
Co-authored papers 3
Colin A Semple
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 2
Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 2
Andreas Lennartsson
Karolinska Institute
Co-authored papers 2
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 2
Michihira Tagami
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Martin S Taylor
Institute of Genetics and Cancer, University of Edinburgh
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Christophe Simon
RIKEN Yokohama Institute
Co-authored papers 2
Winston Hide
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