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Author Details

David Swigon
University of Pittsburgh
1998
36
17
PMIDPaper TitleJournal TitlePublished Year
37270711Rigorous Mapping of Data to Qualitative Properties of Parameter Values and Dynamics: A Case Study on a Two-Variable Lotka-Volterra System.Bull Math Biol2023
34757193A data-driven model of the role of energy in sepsis.J Theor Biol2022
35665340Identification of Clinical Phenotypes in Septic Patients Presenting With Hypotension or Elevated Lactate.Front Med (Lausanne)2022
36812511Unifying cardiovascular modelling with deep reinforcement learning for uncertainty aware control of sepsis treatment.PLOS Digit Health2022
30823724Asset price dynamics for a two-asset market system.Chaos2019
30149010Mathematical modeling of energy consumption in the acute inflammatory response.J Theor Biol2019
30496215Slow-fast analysis of a multi-group asset flow model with implications for the dynamics of wealth.PLoS One2018
31384843Characterization of Blood Volume Space and Mitochondrial Activity in Functional Renal Cells.IFAC Pap OnLine2018
31427833APT-MCMC, a C++/Python implementation of Markov Chain Monte Carlo for parameter identification.Comput Chem Eng2018
28904202Discrete Dynamical Modeling of Influenza Virus Infection Suggests Age-Dependent Differences in Immunity.J Virol2017
26968022A One-Nearest-Neighbor Approach to Identify the Original Time of Infection Using Censored Baboon Sepsis Data.Crit Care Med2016
25843213The inflammatory response to influenza A virus (H1N1): An experimental and mathematical study.J Theor Biol2015
26244863A Three-Tiered Study of Differences in Murine Intrahost Immune Response to Multiple Pneumococcal Strains.PLoS One2015
24594373A mathematical model of intrahost pneumococcal pneumonia infection dynamics in murine strains.J Theor Biol2014
25266818A large-scale immuno-epidemiological simulation of influenza A epidemics.BMC Public Health2014
25385626DNA topology confers sequence specificity to nonspecific architectural proteins.Proc Natl Acad Sci U S A2014
24800809Lac repressor mediated DNA looping: Monte Carlo simulation of constrained DNA molecules complemented with current experimental results.PLoS One2014
23514153Dynamical simulations of DNA supercoiling and compression.Biochem Soc Trans2013
23421747Using a continuum model to predict closure time of gaps in intestinal epithelial cell layers.Wound Repair Regen2013
23457581Interplay of protein and DNA structure revealed in simulations of the lac operon.PLoS One2013
23514154Structural insights into the role of architectural proteins in DNA looping deduced from computer simulations.Biochem Soc Trans2013
21281567Continuum model of collective cell migration in wound healing and colony expansion.Biophys J2011
18950647A simple mathematical model of signaling resulting from the binding of lipopolysaccharide with Toll-like receptor 4 demonstrates inherent preconditioning behavior.Math Biosci2009
18586040Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte Carlo simulations.J Mol Biol2008
23874000Mesoscale modeling of multi-protein-DNA assemblies: the role of the catabolic activator protein in Lac-repressor-mediated looping.Int J Non Linear Mech2008
17266989A dynamical model of human immune response to influenza A virus infection.J Theor Biol2007
17704181One-dimensional elastic continuum model of enterocyte layer migration.Biophys J2007
16785444Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation.Proc Natl Acad Sci U S A2006
26626674Sequence-Dependent Effects in the Cyclization of Short DNA.J Chem Theory Comput2006
15102444Catabolite activator protein: DNA binding and transcription activation.Curr Opin Struct Biol2004
15306458Implications of the dependence of the elastic properties of DNA on nucleotide sequence.Philos Trans A Math Phys Eng Sci2004
15306451Theory of self-contact in Kirchhoff rods with applications to supercoiling of knotted and unknotted DNA plasmids.Philos Trans A Math Phys Eng Sci2004
12547757Relating single-molecule measurements to thermodynamics.Biophys J2003
11046320Elastic stability of DNA configurations. II. Supercoiled plasmids with self-contact.Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics2000
11046319Elastic stability of DNA configurations. I. General theory.Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics2000
9591678The elastic rod model for DNA and its application to the tertiary structure of DNA minicircles in mononucleosomes.Biophys J1998
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Collaborators

G Clermont
University of Pittsburgh
Co-authored papers 13
Robert S Parker
University of Pittsburgh
Co-authored papers 5
Ericka Mochan
Carlow University
Co-authored papers 5
Li Ang Zhang
University of Pittsburgh
Co-authored papers 4
George Ermentrout
University of Pittsburgh
Co-authored papers 4
Ipsita Banerjee
University of Pittsburgh
Co-authored papers 3
Jonathan E Rubin
Center for the Neural Basis of Cognition
Co-authored papers 3
Sarah Lukens
University of Pittsburgh
Co-authored papers 3
Alisa Urbano
University of Pittsburgh
Co-authored papers 3
Qi Mi
University of Pittsburgh
Co-authored papers 3
B??atrice Rivi??re
Rice University
Co-authored papers 2
Hernando Gomez
University of Pittsburgh Medical Center
Co-authored papers 2
Franklin R Toapanta
University of Maryland School of Medicine
Co-authored papers 2
Heinz Redl
Ludwig Boltzmann Institute for Experimental and Clinical Traumatology
Co-authored papers 2
Yoram Vodovotz
University of Pittsburgh
Co-authored papers 2
Ivan Ramirez-Zuniga
University of Pittsburgh
Co-authored papers 2
Ted M Ross
Center for Vaccines and Immunology, University of Georgia
Co-authored papers 2
Thesath Nanayakkara
University of Pittsburgh
Co-authored papers 1
Matthew J McCarroll
University of Pittsburgh
Co-authored papers 1
Donald S Burke
Graduate School of Public Health, University of Pittsburghgrid.21925.3d
Co-authored papers 1
Zachary T Aldewereld
UPMC Children's Hospital of Pittsburgh
Co-authored papers 1
Seth A Darst
The Rockefeller University
Co-authored papers 1
John J Grefenstette
University of Pittsburgh
Co-authored papers 1
Carlos Bustamante
University of California berkeley
Co-authored papers 1
Helen M Berman
The State University of New Jersey
Co-authored papers 1
Roni Rosenfeld
Carnegie Mellon University
Co-authored papers 1
Michael Matuszewski
University of Pittsburgh
Co-authored papers 1
Christopher J Langmead
Monash University
Co-authored papers 1
Catherine L Lawson
Institute for Quantitative Biomedicine, State University of New Jersey
Co-authored papers 1
Ian Price
University of Pittsburgh
Co-authored papers 1
Release 1.2