Author details

Full Name

Umit V Catalyurek

Affiliation

Google

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36304115	BOA: A partitioned view of genome assembly.	iScience	2022
31418766	StrainHub: a phylogenetic tool to construct pathogen transmission networks.	Bioinformatics	2020
31864285	The transcriptome of the rumen ciliate Entodinium caudatum reveals some of its metabolic features.	BMC Genomics	2019
25995194	Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States.	J Infect Dis	2016
26626937	Querying Co-regulated Genes on Diverse Gene Expression Datasets Via Biclustering.	Methods Mol Biol	2016
25973956	Allele-specific imbalance mapping at human orthologs of mouse susceptibility to colon cancer (Scc) loci.	Int J Cancer	2015
34753271	Phylogenetic visualization of the spread of H7 influenza A viruses.	Cladistics	2015
26529906	Mitigating bias in planning two-colour microarray experiments.	Int J Data Min Bioinform	2015
26262155	Syndromic Surveillance of Infectious Diseases meets Molecular Epidemiology in a Workflow and Phylogeographic Application.	Stud Health Technol Inform	2015
26958222	A Novel Multiple Choice Question Generation Strategy: Alternative Uses for Controlled Vocabulary Thesauri in Biomedical-Sciences Education.	AMIA Annu Symp Proc	2015
24629096	mrSNP: software to detect SNP effects on microRNA binding.	BMC Bioinformatics	2014
25598745	Massively Multithreaded Maxflow for Image Segmentation on the Cray XMT-2.	Concurr Comput	2014
24521615	NUSAP1 influences the DNA damage response by controlling BRCA1 protein levels.	Cancer Biol Ther	2014
22772837	A comparative analysis of biclustering algorithms for gene expression data.	Brief Bioinform	2013
24483740	Collective modes in light nuclei from first principles.	Phys Rev Lett	2013
24223817	Metagenomic insights into the carbohydrate-active enzymes carried by the microorganisms adhering to solid digesta in the rumen of cows.	PLoS One	2013
23758764	Benchmarking short sequence mapping tools.	BMC Bioinformatics	2013
22189470	KELVIN: a software package for rigorous measurement of statistical evidence in human genetics.	Hum Hered	2011
32313364	The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases.	Cladistics	2011
30009263	Acceleration of Two Point Correlation Function Calculation for Pathology Image Segmentation.	Proc IEEE Int Conf Healthc Inform Imaging Syst Biol	2011
18040742	A knowledge-anchored integrative image search and retrieval system.	J Digit Imaging	2009
21666873	Parallel Materialization of Large ABoxes.	Proc Symp Appl Comput	2009
20161324	Computer-aided Prognosis of Neuroblastoma on Whole-slide Images: Classification of Stromal Development.	Pattern Recognit	2009
19963746	Computer-aided prognosis of neuroblastoma: detection of mitosis and karyorrhexis cells in digitized histological images.	Annu Int Conf IEEE Eng Med Biol Soc	2009
19623771	Stroma classification for neuroblastoma on graphics processors.	Int J Data Min Bioinform	2009
18348945	Large-scale biomedical image analysis in grid environments.	IEEE Trans Inf Technol Biomed	2008
21311740	Translational Research Design Templates, Grid Computing, and HPC.	Proc IPDPS (Conf)	2008
21311723	e-Science, caGrid, and Translational Biomedical Research.	Computer (Long Beach Calif)	2008
18693847	Computerized pathological image analysis for neuroblastoma prognosis.	AMIA Annu Symp Proc	2007
16501185	An XML-based system for synthesis of data from disparate databases.	J Am Med Inform Assoc	2006
15684129	A grid-based image archival and analysis system.	J Am Med Inform Assoc	2005
15000350	The virtual microscope.	IEEE Trans Inf Technol Biomed	2003

1 - 32 of 32

Dimitri Perrin

Queensland University of Technology

Career Start Year 2010

Number of shared co-authors 0

Joshua W K Ho

The University of Hong Kong

Career Start Year 2006

Number of shared co-authors 0

Andy D Perkins

Mississippi State University

Career Start Year 2006

Number of shared co-authors 0

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 0

Xiuzhen Huang

Cedars-Sinai Medical Center.

Career Start Year 2006

Number of shared co-authors 0

Wenjin Jim Zheng

University of Texas Health Science Center at Houston

Career Start Year 2004

Number of shared co-authors 1

Mario Cannataro

Data Analytics Research Center, University Magna Graecia of Catanzaro

Career Start Year 2004

Number of shared co-authors 0

May D Wang

Georgia Institute of Technology

Career Start Year 2003

Number of shared co-authors 0

Blaz Zupan

University of Ljubljana

Career Start Year 1998

Number of shared co-authors 0

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 0

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 1

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 0

Roland Eils

Berlin Institute of Health (BIH) and Charite

Career Start Year 1995

Number of shared co-authors 0

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 0

Pietro Li??

University of Cambridge

Career Start Year 1994

Number of shared co-authors 0

Jill P Mesirov

University of California San Diego

Career Start Year 1992

Number of shared co-authors 0

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 1

Aleksandar Milosavljevic

Baylor College of Medicine

Career Start Year 1991

Number of shared co-authors 0

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 0

Emmanuel Barillot

Institut Curie, Universite PSL

Career Start Year 1991

Number of shared co-authors 0

Bart De Moor

STADIUS Center for Dynamical Systems

Career Start Year 1990

Number of shared co-authors 0

Jonas S Almeida

National Cancer Institute (NCI)

Career Start Year 1990

Number of shared co-authors 2

John Quackenbush

Harvard T. H. Chan School of Public Health

Career Start Year 1989

Number of shared co-authors 0

Warren A Kibbe

Duke Clinical Research Institute, Duke University

Career Start Year 1987

Number of shared co-authors 2

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 0

Vincent Ferretti

Ontario Institute for Cancer Research

Career Start Year 1986

Number of shared co-authors 0

Richard H Scheuermann

J. Craig Venter Institute

Career Start Year 1983

Number of shared co-authors 0

Luciano Milanesi

Institute of Biomedical Technologies - National Research Council of Italy

Career Start Year 1982

Number of shared co-authors 1

Joaqu??n Dopazo

Andalusian Public Foundation Progress and Health-FPS

Career Start Year 1977

Number of shared co-authors 0

Yves Moreau

KU Leuven - University of Leuven

Career Start Year 1967

Number of shared co-authors 0

row(s) 1 - 30 of 30

Joel Saltz

Stony Brook University

Co-authored papers 12

Daniel Janies

University of North Carolina at Charlotte

Co-authored papers 6

Philip R O Payne

Institute for Informatics, Washington University School of Medicine in St. Louis

Co-authored papers 3

Ravi Madduri

Argonne National Laboratory

Co-authored papers 1

Michael C Ostrowski

Hollings Cancer Center, Medical University of South Carolina

Co-authored papers 1

Yungui Huang

Research Institute at Nationwide Childrens Hospital, University of Iowa

Co-authored papers 1

John Burian

Co-authored papers 1

Po-Yin Yen

Institute for Informatics, Washington University School of Medicine

Co-authored papers 1

Shweta Kotian

Center for Drug Evaluation and Research

Co-authored papers 1

Sang-Cheol Seok

Mathematical Medicine LLC

Co-authored papers 1

Veronica J Vieland

The Ohio State University

Co-authored papers 1

Joel O Wertheim

University of California

Co-authored papers 1

Andrew D Johnson

and Blood Institute

Co-authored papers 1

William Valentine-Cooper

Co-authored papers 1

Maryann E Martone

university of california san diego

Co-authored papers 1

Ian Foster

Argonne National Laboratory

Co-authored papers 1

Alberto M Segre

University of Iowa

Co-authored papers 1

Lee A D Cooper

Northwestern Feinberg School of Medicine

Co-authored papers 1

Eliot L Siegel

University of Maryland Medical Intelligent Imaging (UM2ii) Center

Co-authored papers 1

Jeffrey R O'Connell

University of Maryland School of Medicine

Co-authored papers 1

1 - 20

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