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Author Details

Filip Ginter
University of Turku
1996
29
12
PMIDPaper TitleJournal TitlePublished Year
33306472Neural Network and Random Forest Models in Protein Function Prediction.IEEE/ACM Trans Comput Biol Bioinform2022
31605490Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods.J Am Med Inform Assoc2020
33372589Dependency parsing of biomedical text with BERT.BMC Bioinformatics2020
32873340Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings.J Biomed Semantics2020
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
29678056Improving Layman Readability of Clinical Narratives with Unsupervised Synonym Replacement.Stud Health Technol Inform2018
30239666Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling.Database (Oxford)2018
29844966Finding novel relationships with integrated gene-gene association network analysis of <i>Synechocystis sp.</i> PCC 6803 using species-independent text-mining.PeerJ2018
30576487Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction.Database (Oxford)2018
30272184Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task.J Am Med Inform Assoc2018
27175227Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification.J Biomed Semantics2016
26428294Cell line name recognition in support of the identification of synthetic lethality in cancer from text.Bioinformatics2016
27604469An expanded evaluation of protein function prediction methods shows an improvement in accuracy.Genome Biol2016
26099735Care episode retrieval: distributional semantic models for information retrieval in the clinical domain.BMC Med Inform Decis Mak2015
26551766Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis.BMC Bioinformatics2015
24680097Statistical parsing of varieties of clinical Finnish.Artif Intell Med2014
23613707Large-scale event extraction from literature with multi-level gene normalization.PLoS One2013
22719757Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations.Adv Bioinformatics2012
22759458University of Turku in the BioNLP'11 Shared Task.BMC Bioinformatics2012
22177292U-Compare bio-event meta-service: compatible BioNLP event extraction services.BMC Bioinformatics2011
20529932Complex event extraction at PubMed scale.Bioinformatics2010
19299195Towards automated processing of clinical Finnish: sublanguage analysis and a rule-based parser.Int J Med Inform2009
19328036Combining hidden Markov models and latent semantic analysis for topic segmentation and labeling: method and clinical application.Int J Med Inform2009
18426551Comparative analysis of five protein-protein interaction corpora.BMC Bioinformatics2008
19025688All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning.BMC Bioinformatics2008
17291334BioInfer: a corpus for information extraction in the biomedical domain.BMC Bioinformatics2007
16099201Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactions.Int J Med Inform2006
15972097Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation.BMC Bioinformatics2005
8793823Plasma zinc, copper and copper/zinc ratio in intrinsic asthma.J Trace Elem Med Biol1996
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Collaborators

Tapio Salakoski
University of Turku
Co-authored papers 23
Kai Hakala
University of Turku
Co-authored papers 11
Jari Bj??rne
University of Turku
Co-authored papers 10
Suwisa Kaewphan
University of Turku
Co-authored papers 7
Hans Moen
Aalto University
Co-authored papers 6
Farrokh Mehryary
University of Turku
Co-authored papers 6
Sanna Salanter??
60654University of Turku
Co-authored papers 5
Tapio Pahikkala
University of Turku
Co-authored papers 3
Antti Airola
University of Turku
Co-authored papers 3
Prajwal Bhat
Royal Holloway University of London
Co-authored papers 2
Branislava Gemovic
Vinca Institute of Nuclear Sciences, University of Belgrade
Co-authored papers 2
Karin Verspoor
National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre
Co-authored papers 2
Iddo Friedberg
Iowa State University
Co-authored papers 2
David T Jones
University College London
Co-authored papers 2
Tunca Do??an
Hacettepe University
Co-authored papers 2
Steven E Brenner
University of California berkeley
Co-authored papers 2
Jos?? M Fern??ndez
Hospital Universitario y Politecnico la Fe
Co-authored papers 2
Renzhi Cao
Pacific Lutheran University
Co-authored papers 2
Indika Kahanda
University of North Florida
Co-authored papers 2
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 2
Sayoni Das
University College London
Co-authored papers 2
Matteo Re
Universita degli Studi di Milano
Co-authored papers 2
Sophia Ananiadou
Co-authored papers 2
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 2
Alfredo Benso
Italy Consorzio Interuniversitario Nazionale per l'Informatica
Co-authored papers 2
Giuseppe Profiti
University of Bologna
Co-authored papers 2
Christophe Dessimoz
University of Lausanne
Co-authored papers 2
Domenico Cozzetto
Imperial College London
Co-authored papers 2
Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Marco Mesiti
Universita degli Studi di Milano
Co-authored papers 2
Release 1.2