Author details

Full Name

Tanusya M Murali

Affiliation

Yong Loo Lin School of Medicine, National University of Singapore

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37471124	Computational Construction of Toxicant Signaling Networks.	Chem Res Toxicol	2023
37751693	Hybrid structural modeling of alloantibody binding to human leukocyte antigen with rapid and reproducible cross-linking mass spectrometry.	Cell Rep Methods	2023
37889158	Analyzing COVID-19 Vaccine Responses in Transplant Recipients.	Immunohorizons	2023
36158455	Integrating multimodal data through interpretable heterogeneous ensembles.	Bioinform Adv	2022
35469565	Elevated Urinary Tissue Inhibitor of Metalloproteinase-2 and Insulin-Like Growth Factor Binding Protein-7 Predict Drug-Induced Acute Kidney Injury.	Curr Drug Metab	2022
35665012	Generalizable Long COVID Subtypes: Findings from the NIH N3C and RECOVER Programs.	medRxiv	2022
36678399	Switching Heavy Chain Constant Domains Denatures the Paratope 3D Architecture of Influenza Monoclonal Antibodies.	Pathogens	2022
35923321	Integrating multimodal data through interpretable heterogeneous ensembles.	bioRxiv	2022
33159575	Cumulative iodinated contrast exposure for computed tomography during acute kidney injury and major adverse kidney events.	Eur Radiol	2021
33539275	Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019).	J Comput Biol	2021
33691013	Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 -human interactome.	Pac Symp Biocomput	2021
34966926	Interpretable network propagation with application to expanding the repertoire of human proteins that interact with SARS-CoV-2.	Gigascience	2021
34495680	Modeling and analysis of the macronutrient signaling network in budding yeast.	Mol Biol Cell	2021
32376972	Genetic interactions derived from high-throughput phenotyping of 6589 yeast cell cycle mutants.	NPJ Syst Biol Appl	2020
31907445	Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data.	Nat Methods	2020
33110123	Defining the structural basis for human leukocyte antigen reactivity in clinical transplantation.	Sci Rep	2020
28372501	Hyperlactatemia Predicts Citrate Intolerance With Regional Citrate Anticoagulation During Continuous Renal Replacement Therapy.	J Intensive Care Med	2019
31296157	Serial Quantification of Urinary Protein Biomarkers to Predict Drug-induced Acute Kidney Injury.	Curr Drug Metab	2019
31510694	Reconstructing signaling pathways using regular language constrained paths.	Bioinformatics	2019
30704418	Electronic health records accurately predict renal replacement therapy in acute kidney injury.	BMC Nephrol	2019
30792391	Defining the structural basis for human alloantibody binding to human leukocyte antigen allele HLA-A*11:01.	Nat Commun	2019
30450194	Large-scale protein function prediction using heterogeneous ensembles.	F1000Res	2018
30054499	Transcriptomic Analysis of Hepatic Cells in Multicellular Organotypic Liver Models.	Sci Rep	2018
30057757	Automating the PathLinker app for Cytoscape.	F1000Res	2018
27899583	XTalkDB: a database of signaling pathway crosstalk.	Nucleic Acids Res	2017
28413614	The PathLinker app: Connect the dots in protein interaction networks.	F1000Res	2017
28991726	Pathway Analysis with Signaling Hypergraphs.	IEEE/ACM Trans Comput Biol Bioinform	2017
28957495	GraphSpace: stimulating interdisciplinary collaborations in network biology.	Bioinformatics	2017
27494924	Aminoglycoside-associated acute kidney injury in elderly patients with and without shock.	J Antimicrob Chemother	2016
28731481	Corrigendum: Pathway on demand: automated reconstruction of human signaling networks.	NPJ Syst Biol Appl	2016
28725467	Pathways on demand: automated reconstruction of human signaling networks.	NPJ Syst Biol Appl	2016
26400040	Xtalk: a path-based approach for identifying crosstalk between signaling pathways.	Bioinformatics	2016
26310445	Experimental testing of a new integrated model of the budding yeast Start transition.	Mol Biol Cell	2015
28725464	From START to FINISH: computational analysis of cell cycle control in budding yeast.	NPJ Syst Biol Appl	2015
24857424	Signaling hypergraphs.	Trends Biotechnol	2014
23314326	Reconciling differential gene expression data with molecular interaction networks.	Bioinformatics	2013
24384702	Reverse engineering molecular hypergraphs.	IEEE/ACM Trans Comput Biol Bioinform	2013
24099000	Computational approaches for discovery of common immunomodulators in fungal infections: towards broad-spectrum immunotherapeutic interventions.	BMC Microbiol	2013
23895181	Summarizing cellular responses as biological process networks.	BMC Syst Biol	2013
23862675	Systems biology characterization of engineered tissues.	Annu Rev Biomed Eng	2013
23641868	Top-down network analysis to drive bottom-up modeling of physiological processes.	J Comput Biol	2013
23556413	Designing a multicellular organotypic 3D liver model with a detachable, nanoscale polymeric Space of Disse.	Tissue Eng Part C Methods	2013
23516507	The landscape of host transcriptional response programs commonly perturbed by bacterial pathogens: towards host-oriented broad-spectrum drug targets.	PLoS One	2013
22536907	Sensitive detection of pathway perturbations in cancers.	BMC Bioinformatics	2012
24976642	Computationally Driven Experimental Biology.	Computer (Long Beach Calif)	2012
21245926	Discovering networks of perturbed biological processes in hepatocyte cultures.	PLoS One	2011
22479706	Network-based functional enrichment.	BMC Bioinformatics	2011
21966263	Network-based prediction and analysis of HIV dependency factors.	PLoS Comput Biol	2011
21382517	Supervised learning and prediction of physical interactions between human and HIV proteins.	Infect Genet Evol	2011
20412007	A comparative study of genome-wide transcriptional profiles of primary hepatocytes in collagen sandwich and monolayer cultures.	Tissue Eng Part C Methods	2010

1 - 50 of 66

Anthony Gitter

University of Wisconsin

Career Start Year 2007

Number of shared co-authors 1

Andrey Alexeyenko

Karolinska Institutet

Career Start Year 2006

Number of shared co-authors 0

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 0

Woochang Hwang

College of Medicine, Hanyang University

Career Start Year 2006

Number of shared co-authors 0

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Avi Ma'ayan

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 1

Stephen A Ramsey

Oregon State University

Career Start Year 2004

Number of shared co-authors 2

Julio Saez-Rodriguez

Institute of Computational Biomedicine, Heidelberg University

Career Start Year 2004

Number of shared co-authors 0

Jake Y. Chen (CM4AI)

University of Alabama at Birmingham

Career Start Year 2003

Number of shared co-authors 0

Emek Demir

Knight Cancer Institute, Oregon Health & Science University

Career Start Year 2002

Number of shared co-authors 0

Max Kotlyar

Schroeder Arthritis Institute

Career Start Year 2002

Number of shared co-authors 0

Ozgun Babur

Houston Methodist Research Institute

Career Start Year 2002

Number of shared co-authors 0

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Career Start Year 2001

Number of shared co-authors 0

Olga G Troyanskaya

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Career Start Year 2001

Number of shared co-authors 2

Ziv Bar-Joseph

Carnegie Mellon University

Career Start Year 2001

Number of shared co-authors 1

Marcio Luis Acencio

Norwegian University of Science and Technology

Career Start Year 2000

Number of shared co-authors 0

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 1

Roded Sharan

Tel Aviv University

Career Start Year 2000

Number of shared co-authors 0

Joshua M Stuart

University of California at Santa Cruz

Career Start Year 2000

Number of shared co-authors 0

Ralf Herwig

Max Planck Institute for Molecular Genetics

Career Start Year 1998

Number of shared co-authors 0

Guanming Wu

Oregon Health and Science University

Career Start Year 1998

Number of shared co-authors 0

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 0

Trey Ideker (CM4AI)

University of California San Diego

Career Start Year 1996

Number of shared co-authors 1

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 1

Dennis Shasha

Courant Institute of Mathematical Sciences, New York University

Career Start Year 1994

Number of shared co-authors 2

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 1

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 0

Jason E McDermott

Pacific Northwest National Laboratory

Career Start Year 1993

Number of shared co-authors 1

Andrea Califano

Columbia University

Career Start Year 1993

Number of shared co-authors 1

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 0

row(s) 1 - 30 of 30

Simon Kasif

Boston University

Co-authored papers 7

Anna Ritz

Reed College

Co-authored papers 5

Bruno W Sobral

Co-authored papers 5

Gaurav Pandey

Sanjay Gandhi Post Graduate Institute of Medical Sciences

Co-authored papers 3

Brett M Tyler

Oregon State University

Co-authored papers 2

Judith Klein-Seetharaman

School of Molecular Sciences & College of Health Solutions, Arizona State University

Co-authored papers 2

Yared H Kidane

Co-authored papers 2

Richard A Moffitt

Stony Brook University, and Stony Brook Cancer Center

Co-authored papers 1

Kristin Kostka

Co-authored papers 1

Kenneth J Wilkins

National Institute of Diabetes and Digestive and Kidney Disease

Co-authored papers 1

Hannah Davis

University Health System and the University of Texas Health at San Antonio

Co-authored papers 1

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 1

Hannah Blau

Co-authored papers 1

Julie A McMurry

University of Colorado - Anschutz Medical Campus

Co-authored papers 1

Timothy Bergquist

University of Washington School of Medicine

Co-authored papers 1

Johanna Loomba

Integrated Translational Health Research Institute of Virginia (iTHRIV)

Co-authored papers 1

Arjun Krishnan

Michigan State University

Co-authored papers 1

Tiffany J Callahan

Columbia University

Co-authored papers 1

Corneliu Antonescu

Co-authored papers 1

Luca Cappelletti

Co-authored papers 1

Blessy Antony

Co-authored papers 1

Juan Lavista Ferres

Microsoft Corporation

Co-authored papers 1

Melissa A Haendel

Co-authored papers 1

Anthony Solomonides

Research Institute, NorthShore University HealthSystem

Co-authored papers 1

Michael Gargano

Co-authored papers 1

Michael G Katze

University of Washington

Co-authored papers 1

Charisse Madlock-Brown

University of Tennessee Health Science Center

Co-authored papers 1

Bryan Laraway

University of Colorado Anschutz Medical Campus

Co-authored papers 1

Christopher G Chute

Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota

Co-authored papers 1

Charles R Cantor

Co-authored papers 1

1 - 30

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