Author details

Full Name

Paul G Giresi

Affiliation

Center for Personal Dynamic Regulomes

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

Nathan Sheffield (CM4AI)

PMID	Paper Title	Journal Title	Published Year
32937437	Identification of human CD4<sup>+</sup> T cell populations with distinct antitumor activity.	Sci Adv	2020
32937437	Identification of human CD4<sup>+</sup> T cell populations with distinct antitumor activity.	Sci Adv	2020
31375813	Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion.	Nat Biotechnol	2019
31375813	Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion.	Nat Biotechnol	2019
30145115	A Chromatin Basis for Cell Lineage and Disease Risk in the Human Pancreas.	Cell Syst	2018
30145115	A Chromatin Basis for Cell Lineage and Disease Risk in the Human Pancreas.	Cell Syst	2018
28781121	Repression of Stress-Induced LINE-1 Expression Protects Cancer Cell Subpopulations from Lethal Drug Exposure.	Cancer Cell	2017
28625481	Chromatin Accessibility Landscape of Cutaneous T Cell Lymphoma and Dynamic Response to HDAC Inhibitors.	Cancer Cell	2017
28781121	Repression of Stress-Induced LINE-1 Expression Protects Cancer Cell Subpopulations from Lethal Drug Exposure.	Cancer Cell	2017
29220033	Challenges and recommendations for epigenomics in precision health.	Nat Biotechnol	2017
29220033	Challenges and recommendations for epigenomics in precision health.	Nat Biotechnol	2017
28625481	Chromatin Accessibility Landscape of Cutaneous T Cell Lymphoma and Dynamic Response to HDAC Inhibitors.	Cancer Cell	2017
25784959	STAT3 acts through pre-existing nucleosome-depleted regions bound by FOS during an epigenetic switch linking inflammation to cancer.	Epigenetics Chromatin	2015
25784959	STAT3 acts through pre-existing nucleosome-depleted regions bound by FOS during an epigenetic switch linking inflammation to cancer.	Epigenetics Chromatin	2015
26251845	Individuality and variation of personal regulomes in primary human T cells.	Cell Syst	2015
26683334	A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63.	Genome Biol	2015
26251845	Individuality and variation of personal regulomes in primary human T cells.	Cell Syst	2015
26683334	A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63.	Genome Biol	2015
23547014	A detailed protocol for formaldehyde-assisted isolation of regulatory elements (FAIRE).	Curr Protoc Mol Biol	2013
24097267	Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.	Nat Methods	2013
24243019	Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.	Cell	2013
23547014	A detailed protocol for formaldehyde-assisted isolation of regulatory elements (FAIRE).	Curr Protoc Mol Biol	2013
24097267	Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.	Nat Methods	2013
24243019	Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.	Cell	2013
22262007	Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA.	Nat Protoc	2012
22262007	Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA.	Nat Protoc	2012
21750106	Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.	Genome Res	2011
21750106	Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.	Genome Res	2011
21787385	ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions.	Genome Biol	2011
21787385	ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions.	Genome Biol	2011
20118932	A map of open chromatin in human pancreatic islets.	Nat Genet	2010
20118932	A map of open chromatin in human pancreatic islets.	Nat Genet	2010
19303047	Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).	Methods	2009
19303047	Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).	Methods	2009
19560424	Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae.	Mol Cell	2009
19560424	Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae.	Mol Cell	2009
17179217	FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.	Genome Res	2007
17179217	FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.	Genome Res	2007
17293863	X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation.	Nat Genet	2007
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17293863	X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation.	Nat Genet	2007
16503136	Regulation of nucleosome stability as a mediator of chromatin function.	Curr Opin Genet Dev	2006
16503136	Regulation of nucleosome stability as a mediator of chromatin function.	Curr Opin Genet Dev	2006
16791206	How to find an opening (or lots of them).	Nat Methods	2006
16791206	How to find an opening (or lots of them).	Nat Methods	2006
15687482	Identification of a molecular signature of sarcopenia.	Physiol Genomics	2005
15608089	Transcriptional profile of a myotube starvation model of atrophy.	J Appl Physiol (1985)	2005
15687482	Identification of a molecular signature of sarcopenia.	Physiol Genomics	2005
15608089	Transcriptional profile of a myotube starvation model of atrophy.	J Appl Physiol (1985)	2005

1 - 50 of 52

Yunjiang Qiu

Ludwig Institute for Cancer Research, University of California

Career Start Year 2015

Number of shared co-authors 2

Michael J Guertin

Center for Cell Analysis and Modeling, University of Connecticut

Career Start Year 2010

Number of shared co-authors 1

Greg Donahue

Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania

Career Start Year 2010

Number of shared co-authors 1

Alex P Reynolds

Altius Institute for Biomedical Sciences

Career Start Year 2009

Number of shared co-authors 37

Chongzhi Zang

Center for Public Health Genomics, University of Virginia

Career Start Year 2008

Number of shared co-authors 4

Robin Andersson

University of Copenhagen

Career Start Year 2007

Number of shared co-authors 6

Songjoon Baek

Center for Cancer Research, National Cancer Institute

Career Start Year 2006

Number of shared co-authors 8

Jun S Song

University of Illinois at Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 13

J Peter Svensson

Karolinska Institutet

Career Start Year 2005

Number of shared co-authors 0

Shyam Prabhakar

Genome Institute of Singapore (GIS)

Career Start Year 2004

Number of shared co-authors 8

Guillaume J Filion

University of Toronto Scarborough

Career Start Year 2004

Number of shared co-authors 0

Alexias Safi

Center for Genomic and Computational Biology, Duke University Medical Center

Career Start Year 2003

Number of shared co-authors 32

Eric Haugen

Altius Institute for Biomedical Sciences

Career Start Year 2003

Number of shared co-authors 58

Michael J Buck

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 2002

Number of shared co-authors 2

Ho-Ryun Chung

Institute of Medical Bioinformatics and Biostatistics, Philipps University of Marburg

Career Start Year 2002

Number of shared co-authors 2

Tarjei S Mikkelsen

Harvard University, USA Broad Institute, USA Harvard Stem Cell Institute

Career Start Year 2001

Number of shared co-authors 35

Peter J Park

Harvard Medical School

Career Start Year 2001

Number of shared co-authors 33

Stefan Bekiranov

University of Virginia

Career Start Year 2000

Number of shared co-authors 4

Michael Y Tolstorukov

Dana-Farber Cancer Institute

Career Start Year 2000

Number of shared co-authors 15

Benjamin P Berman

Institute for Medical Research Israel-Canada, The Hebrew University of Jerusalem

Career Start Year 2000

Number of shared co-authors 19

Sven Heinz

U.C. San Diego School of Medicine

Career Start Year 2000

Number of shared co-authors 4

Duncan T Odom

Cancer Research UK Cambridge Institute, University of Cambridge

Career Start Year 1999

Number of shared co-authors 22

Martin Hirst

University of British Columbia

Career Start Year 1998

Number of shared co-authors 31

Boris Lenhard

MRC London Institute of Medical Sciences

Career Start Year 1996

Number of shared co-authors 39

Colin Logie

Radboud Institute for Molecular Science, Radboud University

Career Start Year 1995

Number of shared co-authors 1

Bradley E Bernstein

Broad Institute of MIT and Harvard

Career Start Year 1994

Number of shared co-authors 34

Oliver J Rando

University of Massachusetts Chan Medical School

Career Start Year 1994

Number of shared co-authors 8

Bas van Steensel

Oncode Institute, Netherlands Cancer Institute

Career Start Year 1991

Number of shared co-authors 9

Frank C P Holstege

Princess Maxima Center for Pediatric Oncology

Career Start Year 1990

Number of shared co-authors 1

Steven Henikoff

Fred Hutchinson Cancer Center

Career Start Year 1974

Number of shared co-authors 14

row(s) 1 - 30 of 30

Jason D Lieb

The University of Chicago

Co-authored papers 13

Howard Y Chang

Center for Personal Dynamic Regulomes, Stanford University

Co-authored papers 8

William J Greenleaf

Stanford University

Co-authored papers 6

Jeremy M Simon

University of North Carolina

Co-authored papers 4

Kun Qu

University of Science and Technology of China

Co-authored papers 4

Vishwanath R Iyer

Indian Institute of Technology Bombay

Co-authored papers 3

Ryan M McDaniell

The Children's Hospital of Philadelphia

Co-authored papers 2

Ansuman T Satpathy

Stanford University

Co-authored papers 2

Ewan Birney

European Bioinformatics Institute

Co-authored papers 2

Alexander E Urban

Co-authored papers 2

Gregory E Crawford

Center for Genomic & Computational Biology, Duke University

Co-authored papers 2

Michael Snyder

Stanford University

Co-authored papers 2

Jonghwan Kim

Co-authored papers 2

Damian Keefe

University of Adelaide

Co-authored papers 2

Kevin Struhl

Co-authored papers 2

Roland D Green

NimbleGen Systems Inc.

Co-authored papers 2

Mark Gerstein

Yale University

Co-authored papers 1

Pamela J Thomas

Co-authored papers 1

Nancy F Hansen

National Human Genome Research Institute, National Institutes of Health

Co-authored papers 1

Suchit Jhunjhunwala

Genentech Inc.

Co-authored papers 1

Pawandeep Dhami

Co-authored papers 1

Atif Shahab

Co-authored papers 1

Yong Yu

Co-authored papers 1

Yijun Ruan

Co-authored papers 1

Kayla E Smith

Co-authored papers 1

Daryl J Thomas

University of California at Santa Cruz

Co-authored papers 1

Bum-Kyu Lee

Cancer Research Center, University at Albany, State University of New York

Co-authored papers 1

Nathan Sheffield (CM4AI)

University of Virginia

Co-authored papers 1

H Efsun Arda

Center for Cancer Research, National Cancer Institute, National Institutes of Health

Co-authored papers 1

Madhavan Ganesh

Co-authored papers 1

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