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| 36350631 | Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRDÂ and ViPR. | Nucleic Acids Res | 2023 |
| 37435441 | Engineering of increased L-Threonine production in bacteria by combinatorial cloning and machine learning. | Metab Eng Commun | 2023 |
| 36960342 | Data augmentation and multimodal learning for predicting drug response in patient-derived xenografts from gene expressions and histology images. | Front Med (Lausanne) | 2023 |
| 36747041 | AI-accelerated protein-ligand docking for SARS-CoV-2 is 100-fold faster with no significant change in detection. | Sci Rep | 2023 |
| 34524425 | A cross-study analysis of drug response prediction in cancer cell lines. | Brief Bioinform | 2022 |
| 36507076 | TULIP: An RNA-seq-based Primary Tumor Type Prediction Tool Using Convolutional Neural Networks. | Cancer Inform | 2022 |
| 36451881 | GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics. | bioRxiv | 2022 |
| 34793155 | High-Throughput Virtual Screening and Validation of a SARS-CoV-2 Main Protease Noncovalent Inhibitor. | J Chem Inf Model | 2022 |
| 34001007 | Learning curves for drug response prediction in cancer cell lines. | BMC Bioinformatics | 2021 |
| 34956592 | Pandemic drugs at pandemic speed: infrastructure for accelerating COVID-19 drug discovery with hybrid machine learning- and physics-based simulations on high-performance computers. | Interface Focus | 2021 |
| 34379107 | A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes. | Brief Bioinform | 2021 |
| 34211076 | Publisher Correction: Converting tabular data into images for deep learning with convolutional neural networks. | Sci Rep | 2021 |
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| 32933072 | Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models. | Genes (Basel) | 2020 |
| 31667520 | The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. | Nucleic Acids Res | 2020 |
| 33093487 | Ensemble transfer learning for the prediction of anti-cancer drug response. | Sci Rep | 2020 |
| 28968762 | PATRIC as a unique resource for studying antimicrobial resistance. | Brief Bioinform | 2019 |
| 32914016 | Genomic Analysis of Metastatic Solid Tumors in Veterans: Findings From the VHA National Precision Oncology Program. | JCO Precis Oncol | 2019 |
| 31632915 | AI Meets Exascale Computing: Advancing Cancer Research With Large-Scale High Performance Computing. | Front Oncol | 2019 |
| 30992350 | Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information. | mBio | 2019 |
| 29323230 | Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae. | Sci Rep | 2018 |
| 29979655 | KBase: The United States Department of Energy Systems Biology Knowledgebase. | Nat Biotechnol | 2018 |
| 30577754 | Predicting tumor cell line response to drug pairs with deep learning. | BMC Bioinformatics | 2018 |
| 30577736 | CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research. | BMC Bioinformatics | 2018 |
| 29277864 | Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center. | Methods Mol Biol | 2018 |
| 27899627 | Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. | Nucleic Acids Res | 2017 |
| 28232424 | Genome Sequences of Three <i>Brucella canis</i> Strains Isolated from Humans and a Dog. | Genome Announc | 2017 |
| 28280013 | Genome Sequence of <i>Porphyromonas gingivalis</i> Strain A7A1-28. | Genome Announc | 2017 |
| 28254974 | Genome Sequences of Two <i>Brucella suis</i> Strains Isolated from the Same Patient, 8 Years Apart. | Genome Announc | 2017 |
| 28082501 | Genome Sequence of Porphyromonas gingivalis Strain 381. | Genome Announc | 2017 |
| 29051239 | Whole-Genome Sequencing of a Human Clinical Isolate of the Novel Species <i>Klebsiella quasivariicola</i> sp. nov. | Genome Announc | 2017 |
| 28512093 | Population Genomic Analysis of 1,777 Extended-Spectrum Beta-Lactamase-Producing <i>Klebsiella pneumoniae</i> Isolates, Houston, Texas: Unexpected Abundance of Clonal Group 307. | mBio | 2017 |
| 28776045 | Whole-Genome Sequencing of Human Clinical <i>Klebsiella pneumoniae</i> Isolates Reveals Misidentification and Misunderstandings of <i>Klebsiella pneumoniae</i>, <i>Klebsiella variicola</i>, and <i>Klebsiella quasipneumoniae</i>. | mSphere | 2017 |
| 27297683 | Antimicrobial Resistance Prediction in PATRIC and RAST. | Sci Rep | 2016 |
| 27617060 | Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34. | Stand Genomic Sci | 2016 |
| 27811105 | Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds. | Genome Announc | 2016 |
| 25569221 | A RESTful API for accessing microbial community data for MG-RAST. | PLoS Comput Biol | 2015 |
| 26543127 | Genome Sequence of Porphyromonas gingivalis Strain AJW4. | Genome Announc | 2015 |
| 26404590 | Genome Sequence of Porphyromonas gingivalis Strain A7436. | Genome Announc | 2015 |
| 25964331 | Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species. | Proc Natl Acad Sci U S A | 2015 |
| 25614562 | Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment. | Genome Announc | 2015 |
| 25666585 | RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. | Sci Rep | 2015 |
| 23991253 | Complete genome sequence of Halorhodospira halophila SL1. | Stand Genomic Sci | 2013 |
| 24501649 | Complete genome sequence of Arthrobacter sp. strain FB24. | Stand Genomic Sci | 2013 |
| 24039948 | Detection of Bacillus anthracis DNA in complex soil and air samples using next-generation sequencing. | PLoS One | 2013 |
| 22158392 | Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. | ISME J | 2012 |
| 23407619 | Complete genome sequence of Thauera aminoaromatica strain MZ1T. | Stand Genomic Sci | 2012 |
| 23251337 | The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation. | PLoS One | 2012 |
| 22700702 | RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics. | Nucleic Acids Res | 2012 |
| 22675600 | Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)). | Stand Genomic Sci | 2012 |