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Author Details

Brett E Pickett
Brigham Young University
2009
47
18
PMIDPaper TitleJournal TitlePublished Year
36785619Transcriptomics secondary analysis of severe human infection with SARS-CoV-2 identifies gene expression changes and predicts three transcriptional biomarkers in leukocytes.Comput Struct Biotechnol J2023
35341048Chikungunya virus time course infection of human macrophages reveals intracellular signaling pathways relevant to repurposed therapeutics.PeerJ2022
35628390Meta-Analysis of Two Human RNA-seq Datasets to Determine Periodontitis Diagnostic Biomarkers and Drug Target Candidates.Int J Mol Sci2022
35627294Mutation in Hemagglutinin Antigenic Sites in Influenza A pH1N1 Viruses from 2015-2019 in the United States Mountain West, Europe, and the Northern Hemisphere.Genes (Basel)2022
35526677Characterization of Staphylococcus aureus biofilms via crystal violet binding and biochemical composition assays of isolates from hospitals, raw meat, and biofilm-associated gene mutants.Microb Pathog2022
37469625SnakeWRAP: a Snakemake workflow to facilitate automated processing of metagenomic data through the metaWRAP pipeline.F1000Res2022
36873459Joint Secondary Transcriptomic Analysis of Non-Hodgkin's B-Cell Lymphomas Predicts Reliance on Pathways Associated with the Extracellular Matrix and Robust Diagnostic Biomarkers.J Bioinform Syst Biol2022
36209971Comparative meta-analysis of host transcriptional response during Streptococcus pneumoniae carriage or infection.Microb Pathog2022
36204651Comparison of Intracellular Transcriptional Response of NHBE Cells to Infection with SARS-CoV-2 Washington and New York Strains.Front Cell Infect Microbiol2022
36033592Analyzing the impact of a real-life outbreak simulator on pandemic mitigation: An epidemiological modeling study.Patterns (N Y)2022
35221915Single-Cell RNA Sequencing Characterizes the Molecular Heterogeneity of the Larval Zebrafish Optic Tectum.Front Mol Neurosci2022
35214729Impact of Local and Demographic Factors on Early COVID-19 Vaccine Hesitancy among Health Care Workers in New York City Public Hospitals.Vaccines (Basel)2022
35327505CD5 Deficiency Alters Helper T Cell Metabolic Function and Shifts the Systemic Metabolome.Biomedicines2022
34002013Genome-wide bioinformatic analyses predict key host and viral factors in SARS-CoV-2 pathogenesis.Commun Biol2021
34435944Alphaviruses: Host pathogenesis, immune response, and vaccine & treatment updates.J Gen Virol2021
34372525Evaluation of ELISA-Based Multiplex Peptides for the Detection of Human Serum Antibodies Induced by Zika Virus Infection across Various Countries.Viruses2021
32546784Author Correction: Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection.Nat Commun2020
32632248Collective interactions augment influenza A virus replication in a host-dependent manner.Nat Microbiol2020
32439901Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection.Nat Commun2020
30742853Optimization of qRT-PCR assay for zika virus detection in human serum and urine.Virus Res2019
31341640Evolutionary dynamics and molecular epidemiology of West Nile virus in New York State: 1999-2015.Virus Evol2019
31448130Erratum: Evolutionary dynamics and molecular epidemiology of <i>West Nile virus</i> in New York State: 1999-2015.Virus Evol2019
29757994Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.Viruses2018
29903816Sequences of Zika Virus Genomes from a Pediatric Cohort in Nicaragua.Genome Announc2018
30059496Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic.PLoS Negl Trop Dis2018
30453684Characterizing the Different Effects of Zika Virus Infection in Placenta and Microglia Cells.Viruses2018
30418969Growth and adaptation of Zika virus in mammalian and mosquito cells.PLoS Negl Trop Dis2018
30367096Whole genome sequencing, variant analysis, phylogenetics, and deep sequencing of Zika virus strains.Sci Rep2018
29782933Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa.Infect Genet Evol2018
29371358Whole-Genome Sequences of Zika Virus FLR Strains after Passage in Vero or C6/36 Cells.Genome Announc2018
27679478Influenza Research Database: An integrated bioinformatics resource for influenza virus research.Nucleic Acids Res2017
28751385Identification of Dezidougou Virus in a DAK AR 41524 Zika Virus Stock.Genome Announc2017
28562637Identification of diagnostic peptide regions that distinguish Zika virus from related mosquito-borne Flaviviruses.PLoS One2017
25741011Diversifying Selection Analysis Predicts Antigenic Evolution of 2009 Pandemic H1N1 Influenza A Virus in Humans.J Virol2015
25861210A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway.Evol Bioinform Online2015
24936976Standardized metadata for human pathogen/vector genomic sequences.PLoS One2014
25977790A comprehensive collection of systems biology data characterizing the host response to viral infection.Sci Data2014
25064525Toward a method for tracking virus evolutionary trajectory applied to the pandemic H1N1 2009 influenza virus.Infect Genet Evol2014
24210098Metadata-driven comparative analysis tool for sequences (meta-CATS): an automated process for identifying significant sequence variations that correlate with virus attributes.Virology2013
22006842ViPR: an open bioinformatics database and analysis resource for virology research.Nucleic Acids Res2012
23202522Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community.Viruses2012
22260278Influenza research database: an integrated bioinformatics resource for influenza research and surveillance.Influenza Other Respir Viruses2012
22398283Influenza virus sequence feature variant type analysis: evidence of a role for NS1 in influenza virus host range restriction.J Virol2012
20565573Evidence for separation of HCV subtype 1a into two distinct clades.J Viral Hepat2011
21964598A phylogenetic analysis using full-length viral genomes of South American dengue serotype 3 in consecutive Venezuelan outbreaks reveals a novel NS5 mutation.Infect Genet Evol2011
21540379Phylogenetic analysis of eastern equine encephalitis virus isolates from Florida.Am J Trop Med Hyg2011
19821990Recombination in West Nile Virus: minimal contribution to genomic diversity.Virol J2009
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