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Author Details

Eivind Valen
University of Bergen
2008
51
31
PMIDPaper TitleJournal TitlePublished Year
36536091Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing.Nat Methods2023
37798422Characterisation of HNF1A variants in paediatric diabetes in Norway using functional and clinical investigations to unmask phenotype and monogenic diabetes.Diabetologia2023
37986835Ribosome Decision Graphs for the Representation of Eukaryotic RNA Translation Complexity.bioRxiv2023
35154250Small Open Reading Frames, How to Find Them and Determine Their Function.Front Genet2022
36166000Long-read single-molecule RNA structure sequencing using nanopore.Nucleic Acids Res2022
34056595Deep conservation of ribosome stall sites across RNA processing genes.NAR Genom Bioinform2021
33905612CRISPR Genome Editing Made Easy Through the CHOPCHOP Website.Curr Protoc2021
33835463Transcript Isoform-Specific Estimation of Poly(A) Tail Length by Nanopore Sequencing of Native RNA.Methods Mol Biol2021
34898428Rapid genome editing by CRISPR-Cas9-POLD3 fusion.Elife2021
34147079ORFik: a comprehensive R toolkit for the analysis of translation.BMC Bioinformatics2021
32320657Profiling of Small Ribosomal Subunits Reveals Modes and Regulation of Translation Initiation.Cell Rep2020
31932458Intellectual Disability in K<sub>ATP</sub> Channel Neonatal Diabetes.Diabetes Care2020
31940339Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation.PLoS Genet2020
32859265Assessment of tumor suppressor promoter methylation in healthy individuals.Clin Epigenetics2020
31106371CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing.Nucleic Acids Res2019
31783727Trans-splicing of mRNAs links gene transcription to translational control regulated by mTOR.BMC Genomics2019
31266821<i>tailfindr</i>: alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing.RNA2019
30850374Accurate analysis of genuine CRISPR editing events with ampliCan.Genome Res2019
30021517Shoelaces: an interactive tool for ribosome profiling processing and visualization.BMC Genomics2018
28854918Ribosome signatures aid bacterial translation initiation site identification.BMC Biol2017
28977509REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes.Nucleic Acids Res2017
27185894CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering.Nucleic Acids Res2016
27282953Internal guide RNA interactions interfere with Cas9-mediated cleavage.Nat Commun2016
25345765Identifying (non-)coding RNAs and small peptides: challenges and opportunities.Bioessays2015
25937281Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus.Cell Rep2015
24088818ErbB2 upregulates the Na+,HCO3(-)-cotransporter NBCn1/SLC4A7 in human breast cancer cells via Akt, ERK, Src, and Kruppel-like factor 4.FASEB J2014
25387874Nuclear stability and transcriptional directionality separate functionally distinct RNA species.Nat Commun2014
24861617CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing.Nucleic Acids Res2014
24670763An atlas of active enhancers across human cell types and tissues.Nature2014
24670764A promoter-level mammalian expression atlas.Nature2014
24299735Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome.Genome Res2014
24407481Toddler: an embryonic signal that promotes cell movement via Apelin receptors.Science2014
23698349Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs.Development2013
23851456Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.Nat Struct Mol Biol2013
22110045Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.Genome Res2012
21596787PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters.Nucleic Acids Res2011
22047616Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data.BMC Genomics2011
21822281Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes.Nat Struct Mol Biol2011
21887249Systematic clustering of transcription start site landscapes.PLoS One2011
21924514Genomic and chromatin signals underlying transcription start-site selection.Trends Genet2011
19906716JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.Nucleic Acids Res2010
20950280Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus.Eur J Neurosci2010
203482323-methylcholanthrene induces differential recruitment of aryl hydrocarbon receptor to human promoters.Toxicol Sci2010
19074369Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.Genome Res2009
19911049Discovery of regulatory elements is improved by a discriminatory approach.PLoS Comput Biol2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
19574409Dioxin increases the interaction between aryl hydrocarbon receptor and estrogen receptor alpha at human promoters.Toxicol Sci2009
18032727A code for transcription initiation in mammalian genomes.Genome Res2008
18006571JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update.Nucleic Acids Res2008
18272478The genome landscape of ERalpha- and ERbeta-binding DNA regions.Proc Natl Acad Sci U S A2008
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Collaborators

Albin Sandelin
University of Copenhagen
Co-authored papers 21
Xiaobei Zhao
University of Tennessee Health Science Center
Co-authored papers 8
Robin Andersson
University of Copenhagen
Co-authored papers 5
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 5
Torben Heick Jensen
Universitetsbyen 81, Aarhus University
Co-authored papers 5
Piero Carninci
RIKEN Center for Integrative Medical Sciences
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Yun Chen
Hospital of Obstetrics and Gynecology, Fudan University
Co-authored papers 5
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 4
Jun Kawai
RIKEN Center for Integrative Medical Sciences
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Boris Lenhard
MRC London Institute of Medical Sciences
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Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA)
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Mette J??rgensen
University of Copenhagen
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Berit Lilje
Statens Serum Institut
Co-authored papers 3
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RIKEN Center for Integrative Medical Sciences (IMS)
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Mette Boyd
University of Copenhagen
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Brian J Parker
New York University.
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Michael Rehli
University Hospital Regensburg
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Hiromi Nishiyori
Center for Integrative Medical Sciences
Co-authored papers 3
Mitsuyoshi Murata
Center for Integrative Medical Sciences
Co-authored papers 3
Christine A Wells
The University of Melbourne
Co-authored papers 3
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Nicolas Bertin
University Bordeaux, CNRS
Co-authored papers 3
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 3
Jette Bornholdt
University of Copenhagen
Co-authored papers 3
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 3
Miki Kojima
Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology
Co-authored papers 3
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Andreas Lennartsson
Karolinska Institute
Co-authored papers 3
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
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Stefano Gustincich
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