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Author Details

Hiroyuki Kuwahara
King Abdullah University of Science and Technology (KAUST)
2008
30
11
PMIDPaper TitleJournal TitlePublished Year
37354496S-leaping: an efficient downsampling method for large high-throughput sequencing data.Bioinformatics2023
37354496S-leaping: an efficient downsampling method for large high-throughput sequencing data.Bioinformatics2023
35561158Deep learning identifies and quantifies recombination hotspot determinants.Bioinformatics2022
35561158Deep learning identifies and quantifies recombination hotspot determinants.Bioinformatics2022
34645488Lethal variants in humans: lessons learned from a large molecular autopsy cohort.Genome Med2021
33757582Analysis of the effects of related fingerprints on molecular similarity using an eigenvalue entropy approach.J Cheminform2021
34645488Lethal variants in humans: lessons learned from a large molecular autopsy cohort.Genome Med2021
33757582Analysis of the effects of related fingerprints on molecular similarity using an eigenvalue entropy approach.J Cheminform2021
32552793Analysis of transcript-deleterious variants in Mendelian disorders: implications for RNA-based diagnostics.Genome Biol2020
33242396Recessive, Deleterious Variants in SMG8 Expand the Role of Nonsense-Mediated Decay in Developmental Disorders in Humans.Am J Hum Genet2020
32552793Analysis of transcript-deleterious variants in Mendelian disorders: implications for RNA-based diagnostics.Genome Biol2020
33242396Recessive, Deleterious Variants in SMG8 Expand the Role of Nonsense-Mediated Decay in Developmental Disorders in Humans.Am J Hum Genet2020
30590445Systematic selection of chemical fingerprint features improves the Gibbs energy prediction of biochemical reactions.Bioinformatics2019
30601980Promoter analysis and prediction in the human genome using sequence-based deep learning models.Bioinformatics2019
30590445Systematic selection of chemical fingerprint features improves the Gibbs energy prediction of biochemical reactions.Bioinformatics2019
30601980Promoter analysis and prediction in the human genome using sequence-based deep learning models.Bioinformatics2019
28076956SBOLme: a Repository of SBOL Parts for Metabolic Engineering.ACS Synth Biol2017
32995502ACRE: Absolute concentration robustness exploration in module-based combinatorial networks.Synth Biol (Oxf)2017
28961686Sequence2Vec: a novel embedding approach for modeling transcription factor binding affinity landscape.Bioinformatics2017
28388360Molecular characterization of aspartylglucosaminidase, a lysosomal hydrolase upregulated during strobilation in the moon jellyfish, Aurelia aurita.Biosci Biotechnol Biochem2017
28379298Gracob: a novel graph-based constant-column biclustering method for mining growth phenotype data.Bioinformatics2017
28620041A standard-enabled workflow for synthetic biology.Biochem Soc Trans2017
28076956SBOLme: a Repository of SBOL Parts for Metabolic Engineering.ACS Synth Biol2017
32995502ACRE: Absolute concentration robustness exploration in module-based combinatorial networks.Synth Biol (Oxf)2017
28388360Molecular characterization of aspartylglucosaminidase, a lysosomal hydrolase upregulated during strobilation in the moon jellyfish, Aurelia aurita.Biosci Biotechnol Biochem2017
28379298Gracob: a novel graph-based constant-column biclustering method for mining growth phenotype data.Bioinformatics2017
28961686Sequence2Vec: a novel embedding approach for modeling transcription factor binding affinity landscape.Bioinformatics2017
28620041A standard-enabled workflow for synthetic biology.Biochem Soc Trans2017
27131375MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind.Nucleic Acids Res2016
27131375MRE: a web tool to suggest foreign enzymes for the biosynthesis pathway design with competing endogenous reactions in mind.Nucleic Acids Res2016
25818863Parameter estimation methods for gene circuit modeling from time-series mRNA data: a comparative study.Brief Bioinform2015
25818863Parameter estimation methods for gene circuit modeling from time-series mRNA data: a comparative study.Brief Bioinform2015
26566069Beyond initiation-limited translational bursting: the effects of burst size distributions on the stability of gene expression.Integr Biol (Camb)2015
26566069Beyond initiation-limited translational bursting: the effects of burst size distributions on the stability of gene expression.Integr Biol (Camb)2015
25605483Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels.BMC Syst Biol2014
25605483Modeling DNA affinity landscape through two-round support vector regression with weighted degree kernels.BMC Syst Biol2014
23504705Accurate prediction of hot spot residues through physicochemical characteristics of amino acid sequences.Proteins2013
23813015A framework for scalable parameter estimation of gene circuit models using structural information.Bioinformatics2013
23892365Stochastic effects as a force to increase the complexity of signaling networks.Sci Rep2013
23504705Accurate prediction of hot spot residues through physicochemical characteristics of amino acid sequences.Proteins2013
23892365Stochastic effects as a force to increase the complexity of signaling networks.Sci Rep2013
23813015A framework for scalable parameter estimation of gene circuit models using structural information.Bioinformatics2013
22237678Stochastic steady state gain in a gene expression process with mRNA degradation control.J R Soc Interface2012
22237678Stochastic steady state gain in a gene expression process with mRNA degradation control.J R Soc Interface2012
22252387Bistability in feedback circuits as a byproduct of evolution of evolvability.Mol Syst Biol2012
22252387Bistability in feedback circuits as a byproduct of evolution of evolvability.Mol Syst Biol2012
21071804Learning genetic regulatory network connectivity from time series data.IEEE/ACM Trans Comput Biol Bioinform2011
21071804Learning genetic regulatory network connectivity from time series data.IEEE/ACM Trans Comput Biol Bioinform2011
19914258Design and analysis of a robust genetic Muller C-element.J Theor Biol2010
19914258Design and analysis of a robust genetic Muller C-element.J Theor Biol2010
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Collaborators

Xin Gao
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 19
Fowzan S Alkuraya
King Faisal Specialist Hospital and Research Center
Co-authored papers 3
Majed A Alzahrani
King Abdullah University of Science and Technology
Co-authored papers 1
Kym M Boycott
Children's Hospital of Eastern Ontario
Co-authored papers 1
Wei Wang
IBM Thomas J Watson Research Center, University of California Los Angeles, University of North Carolina at Chapel Hill
Co-authored papers 1
James Alastair McLaughlin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Wei Wang
Co-authored papers 1
Stefan T Arold
Co-authored papers 1
Kevin Y Yip
Co-authored papers 1
Limsoon Wong
Co-authored papers 1
Release 1.2