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Author Details

Sunjae Lee
Gwangju Institute of Science and Technology
2007
49
21
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36345155Machine learning with in silico analysis markedly improves survival prediction modeling in colon cancer patients.Cancer Med2023
37692839Integrative analysis of mitochondrial metabolic reprogramming in early-stage colon and liver cancer.Front Oncol2023
37679309Current therapeutic targets and multifaceted physiological impacts of caffeine.Phytother Res2023
37221214Trogocytic molting of T cell microvilli upregulates T cell receptor surface expression and promotes clonal expansion.Nat Commun2023
36681701Metabolic modelling of the human gut microbiome in type 2 diabetes patients in response to metformin treatment.NPJ Syst Biol Appl2023
36896179Integrated analysis of the microbiota-gut-brain axis in response to sleep deprivation and diet-induced obesity.Front Endocrinol (Lausanne)2023
34571050Rifaximin-α reduces gut-derived inflammation and mucin degradation in cirrhosis and encephalopathy: RIFSYS randomised controlled trial.J Hepatol2022
35580931Mitoribosomal defects aggravate liver cancer via aberrant glycolytic flux and T cell exhaustion.J Immunother Cancer2022
35754734Genome-scale metabolic modelling of the human gut microbiome reveals changes in the glyoxylate and dicarboxylate metabolism in metabolic disorders.iScience2022
35454897SRSF6 Regulates the Alternative Splicing of the Apoptotic Fas Gene by Targeting a Novel RNA Sequence.Cancers (Basel)2022
35873415Alterations in the Oral Microbiome Associated With Diabetes, Overweight, and Dietary Components.Front Nutr2022
36163459Integrative functional analysis uncovers metabolic differences between Candida species.Commun Biol2022
36160130Editorial: Systems biology approach for the mechanisms underlying chronic liver disease.Front Med (Lausanne)2022
36151873Host-mycobiome metabolic interactions in health and disease.Gut Microbes2022
35216480A Genome-Wide Screen Reveals That Endocytic Genes Are Important for Pma1p Asymmetry during Cell Division in <i>Saccharomyces cerevisiae</i>.Int J Mol Sci2022
34681774Precise Characterization of Genetic Interactions in Cancer via Molecular Network Refining Processes.Int J Mol Sci2021
33657381Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson's disease.Cell Rep2021
33671067A Systems Biology Approach to Investigating the Interaction between Serotonin Synthesis by Tryptophan Hydroxylase and the Metabolic Homeostasis.Int J Mol Sci2021
33554059Acute kidney injury leading to CKD is associated with a persistence of metabolic dysfunction and hypertriglyceridemia.iScience2021
34522210Aberrant activation of the CD45-Wnt signaling axis promotes stemness and therapy resistance in colorectal cancer cells.Theranostics2021
32265554Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing.Nat Biotechnol2020
32019923Abundance and diversity of resistomes differ between healthy human oral cavities and gut.Nat Commun2020
32917913Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals.Sci Rep2020
32900998Integration of molecular profiles in a longitudinal wellness profiling cohort.Nat Commun2020
32981293Systems Biology: A Multi-Omics Integration Approach to Metabolism and the Microbiome.Endocrinol Metab (Seoul)2020
32123384MEMOTE for standardized genome-scale metabolic model testing.Nat Biotechnol2020
30615941Pyruvate kinase L/R is a regulator of lipid metabolism and mitochondrial function.Metab Eng2019
31229354The Intestine Harbors Functionally Distinct Homeostatic Tissue-Resident and Inflammatory Th17 Cells.Immunity2019
30917328Simplified Intestinal Microbiota to Study Microbe-Diet-Host Interactions in a Mouse Model.Cell Rep2019
30943403Mature Human White Adipocytes Cultured under Membranes Maintain Identity, Function, and Can Transdifferentiate into Brown-like Adipocytes.Cell Rep2019
30606699Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis.EBioMedicine2019
29069445TCSBN: a database of tissue and cancer specific biological networks.Nucleic Acids Res2018
30323767ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling.Front Physiol2018
29361466Integrative Personal Omics Profiles during Periods of Weight Gain and Loss.Cell Syst2018
29456073An Integrated Understanding of the Rapid Metabolic Benefits of a Carbohydrate-Restricted Diet on Hepatic Steatosis in Humans.Cell Metab2018
28736156Improving the economics of NASH/NAFLD treatment through the use of systems biology.Drug Discov Today2017
28495876A subcellular map of the human proteome.Science2017
28827398Network analyses identify liver-specific targets for treating liver diseases.Mol Syst Biol2017
28818916A pathology atlas of the human cancer transcriptome.Science2017
27216817Dysregulated signaling hubs of liver lipid metabolism reveal hepatocellular carcinoma pathogenesis.Nucleic Acids Res2016
26626077Predicting unintended effects of drugs based on off-target tissue effects.Biochem Biophys Res Commun2016
27445830Investigating the Combinatory Effects of Biological Networks on Gene Co-expression.Front Physiol2016
27345421Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance.Cell Metab2016
25259881Anomalies in network bridges involved in bile Acid metabolism predict outcomes of colorectal cancer patients.PLoS One2014
23566173Rule-based multi-scale simulation for drug effect pathway analysis.BMC Med Inform Decis Mak2013
22460606Prioritization of SNPs for genome-wide association studies using an interaction model of genetic variation, gene expression, and trait variation.Mol Cells2012
21396406Synthetic inter-species cooperation of host and virus for targeted genetic evolution.J Biotechnol2011
20504310Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes.BMC Syst Biol2010
17535445bZIPDB: a database of regulatory information for human bZIP transcription factors.BMC Genomics2007
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Collaborators

Adil Mardinoglu
Royal Institute of Technology Science for Life Laboratory Stockholm Sweden.
Co-authored papers 20
Cheng Zhang
KTH-Royal Institute of Technology
Co-authored papers 17
Mathias Uhl??n
KTH Royal Institute of Technology
Co-authored papers 16
Jens Nielsen
Chalmers University of Technology
Co-authored papers 13
Gholamreza Bidkhori
KTH - Royal Institute of Technology, Sweden AIVIVO Ltd. Unit 25
Co-authored papers 9
Doheon Lee
Korea Advanced Institute of Science and Technology
Co-authored papers 9
Muhammad Arif
KTH Royal Institute of Technology
Co-authored papers 6
Zhengtao Liu
Shulan International Medical College, Zhejiang Shuren University
Co-authored papers 5
Rui Benfeitas
Stockholm University
Co-authored papers 5
Michael Snyder
Stanford University
Co-authored papers 4
Kalle von Feilitzen
KTH Royal Institute of Technology
Co-authored papers 3
Peter Nilsson
Linkoping University
Co-authored papers 3
Linn Fagerberg
KTH Royal Institute of Technology
Co-authored papers 3
Jochen M Schwenk
KTH Royal Institute of Technology
Co-authored papers 3
G??ran Bergstr??m
Sahlgrenska University Hospital
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Fredrik Pont??n
Uppsala University
Co-authored papers 2
Evelina Sj??stedt
Karolinska Institutet
Co-authored papers 2
Abdellah Tebani
Normandie University UNIROUEN, INSERM U1245
Co-authored papers 2
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
David Gomez-Cabrero
King Abdullah University of Science and Technology
Co-authored papers 2
Jason A Papin
University of Virginia
Co-authored papers 2
Jos?? P Faria
Argonne National Laboratory
Co-authored papers 2
Christopher S Henry
Argonne National Laboratory
Co-authored papers 2
Cecilia Lindskog
Uppsala University
Co-authored papers 2
Nathan E Lewis
University of California San Diego
Co-authored papers 2
Janaka N Edirisinghe
Computation Institute, University of Chicago
Co-authored papers 2
Bernhard O Palsson
University of California San Diego
Co-authored papers 2
Sophia Hober
KTH Royal Institute of Technology
Co-authored papers 2
Per Oksvold
KTH-Royal Institute of Technology
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Nathan D Price
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Release 1.2