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Author Details

Paula M Mabee
University of South Dakota
1989
46
21
PMIDPaper TitleJournal TitlePublished Year
35285502Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.Syst Biol2022
35285502Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.Syst Biol2022
31596473A Logical Model of Homology for Comparative Biology.Syst Biol2020
31596473A Logical Model of Homology for Comparative Biology.Syst Biol2020
31949317The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education.Bioscience2020
33028186Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities.BMC Bioinformatics2020
31949317The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education.Bioscience2020
33028186Integration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities.BMC Bioinformatics2020
29325126Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes.Syst Biol2018
30576485Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.Database (Oxford)2018
29325126Automated Integration of Trees and Traits: A Case Study Using Paired Fin Loss Across Teleost Fishes.Syst Biol2018
30576485Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.Database (Oxford)2018
26870952Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.PLoS One2016
27191170Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices.PLoS One2016
26870952Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.PLoS One2016
26500251Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes.Mol Biol Evol2016
26500251Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes.Mol Biol Evol2016
27191170Data Sources for Trait Databases: Comparing the Phenomic Content of Monographs and Evolutionary Matrices.PLoS One2016
25562316Finding our way through phenotypes.PLoS Biol2015
25562316Finding our way through phenotypes.PLoS Biol2015
25972520Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy.Database (Oxford)2015
26713234Emerging semantics to link phenotype and environment.PeerJ2015
26220875Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution.Genesis2015
26018570Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies.Syst Biol2015
26713234Emerging semantics to link phenotype and environment.PeerJ2015
26220875Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution.Genesis2015
25972520Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy.Database (Oxford)2015
26018570Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies.Syst Biol2015
25140222Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.J Biomed Semantics2014
25411634Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex.J Biomed Semantics2014
25140222Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.J Biomed Semantics2014
25009735Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.J Biomed Semantics2014
25411634Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex.J Biomed Semantics2014
25009735Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.J Biomed Semantics2014
23327936An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.Database (Oxford)2013
24267744The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.J Biomed Semantics2013
24127438What is an anatomy ontology?Anat Rec (Hoboken)2013
23327936An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.Database (Oxford)2013
24127438What is an anatomy ontology?Anat Rec (Hoboken)2013
24267744The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.J Biomed Semantics2013
22610546Gill-arch musculature of the quillback Carpiodes cyprinus (Cypriniformes: Catostomidae) with a comparison to cyprinids.J Morphol2012
22747804Development of the mandibular, hyoid arch and gill arch skeleton in the Chinese barb Puntius semifasciolatus: comparisons of ossification sequences among Cypriniformes.J Fish Biol2012
22736877500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton.J Appl Ichthyol2012
22460806Segmentation and fusion on the midline: basibranchial homologies in cypriniform fishes.J Morphol2012
22610546Gill-arch musculature of the quillback Carpiodes cyprinus (Cypriniformes: Catostomidae) with a comparison to cyprinids.J Morphol2012
23251424A unified anatomy ontology of the vertebrate skeletal system.PLoS One2012
23409218Phenotype Ontology Research Coordination Network meeting report: creating a community network for comparing and leveraging phenotype-genotype knowledge across species.Stand Genomic Sci2012
23409218Phenotype Ontology Research Coordination Network meeting report: creating a community network for comparing and leveraging phenotype-genotype knowledge across species.Stand Genomic Sci2012
23251424A unified anatomy ontology of the vertebrate skeletal system.PLoS One2012
22747804Development of the mandibular, hyoid arch and gill arch skeleton in the Chinese barb Puntius semifasciolatus: comparisons of ossification sequences among Cypriniformes.J Fish Biol2012
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Collaborators

James P Balhoff
Renaissance Computing Institute, University of North Carolina
Co-authored papers 18
Hilmar Lapp
Duke University
Co-authored papers 17
Wasila M Dahdul
University of California irvine
Co-authored papers 17
Todd J Vision
University of North Carolina
Co-authored papers 11
Melissa A Haendel
American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
Co-authored papers 10
Melissa A Haendel
Co-authored papers 10
Monte Westerfield
Institute of Neuroscience, University of Oregon
Co-authored papers 9
Christopher J Mungall
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 9
Thomas A Dececchi
Mount Marty University
Co-authored papers 8
John G Lundberg
Academy of Natural Sciences of Philadelphia and Drexel University (ANSP)
Co-authored papers 8
Peter E Midford
University of Kansas
Co-authored papers 7
Nizar Ibrahim
University of Portsmouth
Co-authored papers 5
David C Blackburn
University of Florida
Co-authored papers 5
Suzanna E Lewis
Lawrence Berkeley National Laboratory
Co-authored papers 4
Robert E Druzinsky
College of Dentistry, University of Illinois Chicago
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Hong Cui
University of Arizona
Co-authored papers 4
Laurel Cooper
Oregon State University
Co-authored papers 3
Eva Huala
Carnegie Institution for Science
Co-authored papers 3
Ramona L Walls
Critical Path Institute
Co-authored papers 3
Erik Segerdell
Cincinnati Children's Hospital Medical Center
Co-authored papers 3
Andrew R Deans
The Pennsylvania State University, University Park
Co-authored papers 3
Mart??n J Ram??rez
Co-authored papers 2
Kimberly Van Auken
California Institute of Technology
Co-authored papers 2
Eric J Hilton
Virginia Institute of Marine Science
Co-authored papers 2
Laura M Jackson
University of Maine
Co-authored papers 2
Nico M Franz
Arizona State University
Co-authored papers 2
Katja C Seltmann
University of Florida, University of Florida Gainesville
Co-authored papers 2
Anne E Thessen
Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology
Co-authored papers 2
Michael Ashburner
University of Cambridge
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Release 1.2