| 36299420 | Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus. | medRxiv | 2023 |
| 37845201 | Assessing the global risk of typhoid outbreaks caused by extensively drug resistant Salmonella Typhi. | Nat Commun | 2023 |
| 37986857 | Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean. | medRxiv | 2023 |
| 37873191 | DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virus. | medRxiv | 2023 |
| 37768056 | Draft genomes of <i>Aeromonas caviae</i> from patients with cholera-like illness during the 2022-2023 cholera outbreak in Malawi. | Microbiol Resour Announc | 2023 |
| 37811975 | The population-level impact of <i>Enterococcus faecalis</i> genetics on intestinal colonization and extraintestinal infection. | Microbiol Spectr | 2023 |
| 37310918 | Development of an amplicon-based sequencing approach in response to the global emergence of mpox. | PLoS Biol | 2023 |
| 37305707 | Comparative whole genome analysis reveals re-emergence of human Wa-like and DS-1-like G3 rotaviruses after Rotarix vaccine introduction in Malawi. | Virus Evol | 2023 |
| 36921604 | Toward a global virus genomic surveillance network. | Cell Host Microbe | 2023 |
| 36515506 | Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis. | J Clin Microbiol | 2023 |
| 36791724 | Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection. | Cell Rep Med | 2023 |
| 36451022 | Zooming into the structure of the microbiome. | Nat Rev Microbiol | 2023 |
| 33033832 | Rotavirus Genotypes in Hospitalized Children With Acute Gastroenteritis Before and After Rotavirus Vaccine Introduction in Blantyre, Malawi, 1997-2019. | J Infect Dis | 2022 |
| 35439297 | Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci. | Genome Biol Evol | 2022 |
| 35399324 | Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons. | Med | 2022 |
| 36465278 | Prophage-encoded immune evasion factors are critical for <i>Staphylococcus aureus</i> host infection, switching, and adaptation. | Cell Genom | 2022 |
| 36417936 | Daily Rapid Antigen Exit Testing to Tailor University COVID-19 Isolation Policy. | Emerg Infect Dis | 2022 |
| 35864107 | Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion. | Nat Commun | 2022 |
| 36233182 | Evaluation of Dried Blood and Cerebrospinal Fluid Filter Paper Spots for Storing and Transporting Clinical Material for the Molecular Diagnosis of Invasive Meningococcal Disease. | Int J Mol Sci | 2022 |
| 36216891 | Pneumococcal within-host diversity during colonization, transmission and treatment. | Nat Microbiol | 2022 |
| 35225216 | A new perspective on ancient Mitis group streptococcal genetics. | Microb Genom | 2022 |
| 34949516 | Serotype 1 pneumococcus: epidemiology, genomics, and disease mechanisms. | Trends Microbiol | 2022 |
| 35119356 | Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints. | Microb Genom | 2022 |
| 35332175 | Author Correction: Hypervirulent pneumococcal serotype 1 harbours two pneumolysin variants with differential haemolytic activity. | Sci Rep | 2022 |
| 34864895 | RCandy: an R package for visualizing homologous recombinations in bacterial genomes. | Bioinformatics | 2022 |
| 33413118 | Whole genomic comparative analysis of Streptococcus pneumoniae serotype 1 isolates causing invasive and non-invasive infections among children under 5 years in Casablanca, Morocco. | BMC Genomics | 2021 |
| 33489998 | Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life. | Front Pediatr | 2021 |
| 33707741 | Metagenomics for surveillance of respiratory pathogens. | Nat Rev Microbiol | 2021 |
| 33731755 | Author Correction: Hypervirulent pneumococcal serotype 1 harbours two pneumolysin variants with differential haemolytic activity. | Sci Rep | 2021 |
| 33502519 | Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models. | Mol Biol Evol | 2021 |
| 34672715 | Erratum for Betts et al., "Complete Genome Sequence of Streptococcus pneumoniae Strain BVJ1JL, a Serotype 1 Carriage Isolate from Malawi". | Microbiol Resour Announc | 2021 |
| 34550067 | <i>Streptococcus pneumoniae</i> serotypes that frequently colonise the human nasopharynx are common recipients of penicillin-binding protein gene fragments from <i>Streptococcus mitis</i>. | Microb Genom | 2021 |
| 34591678 | Complete Genome Sequence of Streptococcus pneumoniae Strain BVJ1JL, a Serotype 1 Carriage Isolate from Malawi. | Microbiol Resour Announc | 2021 |
| 31094423 | Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data. | Clin Infect Dis | 2020 |
| 31748737 | Bacterial survival: evolve and adapt or perish. | Nat Rev Microbiol | 2020 |
| 33345202 | Using genomics to improve preparedness and response of future epidemics or pandemics in Africa. | Lancet Microbe | 2020 |
| 33033372 | Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. | Commun Biol | 2020 |
| 33057054 | Hypervirulent pneumococcal serotype 1 harbours two pneumolysin variants with differential haemolytic activity. | Sci Rep | 2020 |
| 33293378 | Lower Density and Shorter Duration of Nasopharyngeal Carriage by Pneumococcal Serotype 1 (ST217) May Explain Its Increased Invasiveness over Other Serotypes. | mBio | 2020 |
| 32651390 | Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation. | Nat Commun | 2020 |
| 30905774 | Molecular epidemiology of G12 rotavirus strains during eight consecutive epidemic seasons in the Basque Country (North of Spain), 2010-2018. | Infect Genet Evol | 2019 |
| 30778540 | Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. | J Antimicrob Chemother | 2019 |
| 29142125 | Emergence of Double- and Triple-Gene Reassortant G1P[8] Rotaviruses Possessing a DS-1-Like Backbone after Rotavirus Vaccine Introduction in Malawi. | J Virol | 2018 |
| 28711389 | Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi. | Vaccine | 2017 |
| 28081968 | The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1. | Vaccine | 2017 |
| 28333330 | Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting. | J Antimicrob Chemother | 2017 |
| 28100596 | Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States. | J Clin Microbiol | 2017 |
| 28968897 | Comparative Genomic Analysis and In Vivo Modeling of Streptococcus pneumoniae ST3081 and ST618 Isolates Reveal Key Genetic and Phenotypic Differences Contributing to Clonal Replacement of Serotype 1 in The Gambia. | J Infect Dis | 2017 |
| 28690321 | Adaptation... that's what you need? | Nat Rev Microbiol | 2017 |
| 27821148 | Understanding pneumococcal serotype 1 biology through population genomic analysis. | BMC Infect Dis | 2016 |