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Author Details

Chrispin Chaguza
Yale School of Public Health, YaleUniversity
2015
55
15
Wade Schulz (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36299420Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus.medRxiv2023
37845201Assessing the global risk of typhoid outbreaks caused by extensively drug resistant Salmonella Typhi.Nat Commun2023
37986857Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean.medRxiv2023
37873191DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virus.medRxiv2023
37768056Draft genomes of <i>Aeromonas caviae</i> from patients with cholera-like illness during the 2022-2023 cholera outbreak in Malawi.Microbiol Resour Announc2023
37811975The population-level impact of <i>Enterococcus faecalis</i> genetics on intestinal colonization and extraintestinal infection.Microbiol Spectr2023
37310918Development of an amplicon-based sequencing approach in response to the global emergence of mpox.PLoS Biol2023
37305707Comparative whole genome analysis reveals re-emergence of human Wa-like and DS-1-like G3 rotaviruses after Rotarix vaccine introduction in Malawi.Virus Evol2023
36921604Toward a global virus genomic surveillance network.Cell Host Microbe2023
36515506Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis.J Clin Microbiol2023
36791724Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.Cell Rep Med2023
36451022Zooming into the structure of the microbiome.Nat Rev Microbiol2023
33033832Rotavirus Genotypes in Hospitalized Children With Acute Gastroenteritis Before and After Rotavirus Vaccine Introduction in Blantyre, Malawi, 1997-2019.J Infect Dis2022
35439297Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci.Genome Biol Evol2022
35399324Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons.Med2022
36465278Prophage-encoded immune evasion factors are critical for <i>Staphylococcus aureus</i> host infection, switching, and adaptation.Cell Genom2022
36417936Daily Rapid Antigen Exit Testing to Tailor University COVID-19 Isolation Policy.Emerg Infect Dis2022
35864107Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion.Nat Commun2022
36233182Evaluation of Dried Blood and Cerebrospinal Fluid Filter Paper Spots for Storing and Transporting Clinical Material for the Molecular Diagnosis of Invasive Meningococcal Disease.Int J Mol Sci2022
36216891Pneumococcal within-host diversity during colonization, transmission and treatment.Nat Microbiol2022
35225216A new perspective on ancient Mitis group streptococcal genetics.Microb Genom2022
34949516Serotype 1 pneumococcus: epidemiology, genomics, and disease mechanisms.Trends Microbiol2022
35119356Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints.Microb Genom2022
35332175Author Correction: Hypervirulent pneumococcal serotype 1 harbours two pneumolysin variants with differential haemolytic activity.Sci Rep2022
34864895RCandy: an R package for visualizing homologous recombinations in bacterial genomes.Bioinformatics2022
33413118Whole genomic comparative analysis of Streptococcus pneumoniae serotype 1 isolates causing invasive and non-invasive infections among children under 5 years in Casablanca, Morocco.BMC Genomics2021
33489998Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life.Front Pediatr2021
33707741Metagenomics for surveillance of respiratory pathogens.Nat Rev Microbiol2021
33731755Author Correction: Hypervirulent pneumococcal serotype 1 harbours two pneumolysin variants with differential haemolytic activity.Sci Rep2021
33502519Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models.Mol Biol Evol2021
34672715Erratum for Betts et al., "Complete Genome Sequence of Streptococcus pneumoniae Strain BVJ1JL, a Serotype 1 Carriage Isolate from Malawi".Microbiol Resour Announc2021
34550067<i>Streptococcus pneumoniae</i> serotypes that frequently colonise the human nasopharynx are common recipients of penicillin-binding protein gene fragments from <i>Streptococcus mitis</i>.Microb Genom2021
34591678Complete Genome Sequence of Streptococcus pneumoniae Strain BVJ1JL, a Serotype 1 Carriage Isolate from Malawi.Microbiol Resour Announc2021
31094423Early Signals of Vaccine-driven Perturbation Seen in Pneumococcal Carriage Population Genomic Data.Clin Infect Dis2020
31748737Bacterial survival: evolve and adapt or perish.Nat Rev Microbiol2020
33345202Using genomics to improve preparedness and response of future epidemics or pandemics in Africa.Lancet Microbe2020
33033372Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism.Commun Biol2020
33057054Hypervirulent pneumococcal serotype 1 harbours two pneumolysin variants with differential haemolytic activity.Sci Rep2020
33293378Lower Density and Shorter Duration of Nasopharyngeal Carriage by Pneumococcal Serotype 1 (ST217) May Explain Its Increased Invasiveness over Other Serotypes.mBio2020
32651390Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation.Nat Commun2020
30905774Molecular epidemiology of G12 rotavirus strains during eight consecutive epidemic seasons in the Basque Country (North of Spain), 2010-2018.Infect Genet Evol2019
30778540Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages.J Antimicrob Chemother2019
29142125Emergence of Double- and Triple-Gene Reassortant G1P[8] Rotaviruses Possessing a DS-1-Like Backbone after Rotavirus Vaccine Introduction in Malawi.J Virol2018
28711389Population genetic structure, antibiotic resistance, capsule switching and evolution of invasive pneumococci before conjugate vaccination in Malawi.Vaccine2017
28081968The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1.Vaccine2017
28333330Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting.J Antimicrob Chemother2017
28100596Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States.J Clin Microbiol2017
28968897Comparative Genomic Analysis and In Vivo Modeling of Streptococcus pneumoniae ST3081 and ST618 Isolates Reveal Key Genetic and Phenotypic Differences Contributing to Clonal Replacement of Serotype 1 in The Gambia.J Infect Dis2017
28690321Adaptation... that's what you need?Nat Rev Microbiol2017
27821148Understanding pneumococcal serotype 1 biology through population genomic analysis.BMC Infect Dis2016
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Collaborators

Yale School of Public Health
Co-authored papers 9
Yale School of Public Health
Co-authored papers 6
Yale School of Public Health
Co-authored papers 3
Co-authored papers 2
Yale Center for Genome Analysis, Yale School of Medicine
Co-authored papers 2
Yale School of Public Health
Co-authored papers 2
Yale University
Co-authored papers 2
Wayne State University, Ascension St. John Hospital
Co-authored papers 2
University of Exeter
Co-authored papers 2
Yale School of Public Health
Co-authored papers 2
Broad Institute of MIT and Harvard
Co-authored papers 2
Yale University School of Medicine
Co-authored papers 1
Smurfit Institute of Genetics, Trinity College of Dublin
Co-authored papers 1
Yale School of Public Health
Co-authored papers 1
Co-authored papers 1
Yale School of Public Health
Co-authored papers 1
Yale School of Public Health
Co-authored papers 1
Yale School of Public Health
Co-authored papers 1
Center for Outcomes Research and Evaluation, Yale-New Haven Hospital
Co-authored papers 1
Yale School of Medicine
Co-authored papers 1
Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill
Co-authored papers 1
Yale School of Public Health
Co-authored papers 1
Yale School of Public Health
Co-authored papers 1
Center for Outcomes Research and Evaluation, Yale New Haven Hospital
Co-authored papers 1
University of Nebraska Medical Center
Co-authored papers 1
University of North Dakota School of Medicine
Co-authored papers 1
Yale School of Medicine
Co-authored papers 1
Center for Outcomes Research and Evaluation, Yale-New Haven Hospital
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University of North Carolina at Chapel Hill
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Co-authored papers 1