Skip to Main Content

Author Details

Jacob Pfeil
UC Santa Cruz Genomics Institute
2015
13
8
PMIDPaper TitleJournal TitlePublished Year
36513728Machine learning multi-omics analysis reveals cancer driver dysregulation in pan-cancer cell lines compared to primary tumors.Commun Biol2022
36513728Machine learning multi-omics analysis reveals cancer driver dysregulation in pan-cancer cell lines compared to primary tumors.Commun Biol2022
33712853The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets.Gigascience2021
33712853The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets.Gigascience2021
33244314ProTECT-Prediction of T-Cell Epitopes for Cancer Therapy.Front Immunol2020
33244314ProTECT-Prediction of T-Cell Epitopes for Cancer Therapy.Front Immunol2020
33283136Complete Response to PD-1 Inhibition in an Adolescent With Relapsed Clear Cell Adenocarcinoma of the Cervix Predicted by Neoepitope Burden and APOBEC Signature.JCO Precis Oncol2020
33283136Complete Response to PD-1 Inhibition in an Adolescent With Relapsed Clear Cell Adenocarcinoma of the Cervix Predicted by Neoepitope Burden and APOBEC Signature.JCO Precis Oncol2020
31222016Barriers to accessing public cancer genomic data.Sci Data2019
31651965Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer.JAMA Netw Open2019
31693904Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design.Cell Rep2019
31645344Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor.Cold Spring Harb Mol Case Stud2019
31222016Barriers to accessing public cancer genomic data.Sci Data2019
31645344Comparative RNA-seq analysis aids in diagnosis of a rare pediatric tumor.Cold Spring Harb Mol Case Stud2019
31693904Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design.Cell Rep2019
31651965Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer.JAMA Netw Open2019
28522541A Novel Histone Crosstalk Pathway Important for Regulation of UV-Induced DNA Damage Repair in <i>Saccharomyces cerevisiae</i>.Genetics2017
28522541A Novel Histone Crosstalk Pathway Important for Regulation of UV-Induced DNA Damage Repair in <i>Saccharomyces cerevisiae</i>.Genetics2017
28398314Toil enables reproducible, open source, big biomedical data analyses.Nat Biotechnol2017
28172519RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease.Clin Infect Dis2017
28172519RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease.Clin Infect Dis2017
28398314Toil enables reproducible, open source, big biomedical data analyses.Nat Biotechnol2017
25740935Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution.G3 (Bethesda)2015
26196378Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014.Emerg Infect Dis2015
26196378Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014.Emerg Infect Dis2015
25740935Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution.G3 (Bethesda)2015
  • 1 - 26 of 26

Recommended Authors

Washington University in St. Louis School of Medicine
Career Start Year 2015
Number of shared co-authors 1
McDonnell Genome Institute, Washington University School of Medicine
Career Start Year 2014
Number of shared co-authors 1
The Hospital for Sick Children
Career Start Year 2012
Number of shared co-authors 3
Dana-Farber Cancer Institute
Career Start Year 2009
Number of shared co-authors 8
Broad Institute of Massachusetts Institute of Technology and Harvard
Career Start Year 2008
Number of shared co-authors 1
UPMC Hillman Cancer Center
Career Start Year 2007
Number of shared co-authors 1
QIMR Berghofer Medical Research Institute
Career Start Year 2006
Number of shared co-authors 5
St. Jude Children's Research Hospital
Career Start Year 2006
Number of shared co-authors 9
St Vincent's Hospital Melbourne
Career Start Year 2006
Number of shared co-authors 2
H. Lee Moffitt Cancer Center and Research Institute
Career Start Year 2005
Number of shared co-authors 3
McDonnell Genome Institute, Washington University School of Medicine
Career Start Year 2004
Number of shared co-authors 2
McDonnell Genome Institute, Washington University in St. Louis School of Medicine
Career Start Year 2004
Number of shared co-authors 3
Broad Institute of MIT and Harvard
Career Start Year 2004
Number of shared co-authors 18
University of Augsburg
Career Start Year 2004
Number of shared co-authors 4
Uniformed Services University of the Health Sciences
Career Start Year 2004
Number of shared co-authors 13
Roswell Park Comprehensive Cancer Center
Career Start Year 2003
Number of shared co-authors 0
Washington University
Career Start Year 2003
Number of shared co-authors 5
University of Texas MD Anderson Cancer Center
Career Start Year 2003
Number of shared co-authors 12
University of California
Career Start Year 2003
Number of shared co-authors 0
Washington University
Career Start Year 2003
Number of shared co-authors 6
Princess Margaret Cancer Centre, University Health Network
Career Start Year 2003
Number of shared co-authors 14
Present address: Dxige Research Inc.
Career Start Year 2003
Number of shared co-authors 16
Meyer Cancer Center
Career Start Year 2002
Number of shared co-authors 3
Center for Immunotherapy and Precision-Immuno-Oncology, Cleveland Clinic
Career Start Year 2001
Number of shared co-authors 0
Bloomberg-Kimmel Immunotherapy Institute, Johns Hopkins University School of Medicine
Career Start Year 2001
Number of shared co-authors 3
Mayo Clinic
Career Start Year 2000
Number of shared co-authors 1
Human Phenome Institute and Shanghai Cancer Center, Fudan University
Career Start Year 1997
Number of shared co-authors 1
McDonnell Genome Institute, Washington University School of Medicine
Career Start Year 1997
Number of shared co-authors 16
Changhai Hospital, Second Military Medical University
Career Start Year 1992
Number of shared co-authors 17
Weill-Cornell School of Medicine
Career Start Year 1989
Number of shared co-authors 0

Collaborators

Genomics Institute, University of California Santa Cruz
Co-authored papers 8
Genomics Institute, University of California Santa Cruz
Co-authored papers 7
Co-authored papers 5
Co-authored papers 5
Co-authored papers 5
University of California San Francisco
Co-authored papers 3
Co-authored papers 3
Co-authored papers 3
Bakar Computational Health Sciences Institute, University of California san francisco
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
University of California-San Francisco
Co-authored papers 2
UC Santa Cruz Genomics Institute, University of California
Co-authored papers 2
University of California at Santa Cruz
Co-authored papers 2
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
Co-authored papers 1
Children's Hospital of Philadelphia and the University of Pennsylvania
Co-authored papers 1
Xiangya Hospital of Central South University
Co-authored papers 1
Baylor College of Medicine
Co-authored papers 1
Collegeville
Co-authored papers 1
Wellcome Sanger Institute
Co-authored papers 1
University Children's Hospital Zurich
Co-authored papers 1
The University of Texas Health Science Center at San Antonio
Co-authored papers 1
Co-authored papers 1
Sun Yat-sen University Cancer Center
Co-authored papers 1
Cancer Center, Texas Tech University Health Sciences Center School of Medicine
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
University of California
Co-authored papers 1
Co-authored papers 1
Perelman School of Medicine at the University of Pennsylvania
Co-authored papers 1