Author details

Full Name

Yutao Fu

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
33397987	Long first exons and epigenetic marks distinguish conserved pachytene piRNA clusters from other mammalian genes.	Nat Commun	2021
33863366	A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency.	Genome Biol	2021
32601478	The evolutionarily conserved piRNA-producing locus pi6 is required for male mouse fertility.	Nat Genet	2020
29376823	The genome of the Hi5 germ cell line from <i>Trichoplusia ni</i>, an agricultural pest and novel model for small RNA biology.	Elife	2018
30148885	The temporal landscape of recursive splicing during Pol II transcription elongation in human cells.	PLoS Genet	2018
30001700	Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers.	BMC Genomics	2018
29219070	Predicting human splicing branchpoints by combining sequence-derived features and multi-label learning methods.	BMC Bioinformatics	2017
27271295	Extensive sequencing of seven human genomes to characterize benchmark reference materials.	Sci Data	2016
21776081	An integrated semiconductor device enabling non-optical genome sequencing.	Nature	2011
21349863	ACT: aggregation and correlation toolbox for analyses of genome tracks.	Bioinformatics	2011
21293372	Mapping copy number variation by population-scale genome sequencing.	Nature	2011
21799804	Structural alterations from multiple displacement amplification of a human genome revealed by mate-pair sequencing.	PLoS One	2011
20179767	Whole methylome analysis by ultra-deep sequencing using two-base encoding.	PLoS ONE	2010
20488932	Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns.	Genome Res	2010
19258493	Uncovering multiple molecular targets for caffeine using a drug target validation strategy combining A 2A receptor knockout mice with microarray profiling.	Physiol Genomics	2009
19546169	Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding.	Genome Res	2009
18654629	The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome.	PLoS Genet	2008
18258921	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.	Genome Res	2008
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17568000	Transcription factor binding and modified histones in human bidirectional promoters.	Genome Res	2007
17567998	Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1.	Genome Res	2007
17567997	Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions.	Genome Res	2007
17708682	Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome.	PLoS Genet	2007
17277777	Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.	Nat Genet	2007
17620451	Nucleosome positioning signals in genomic DNA.	Genome Res	2007
17093053	Global mapping of c-Myc binding sites and target gene networks in human B cells.	Proc Natl Acad Sci U S A	2006
16413492	A global map of p53 transcription-factor binding sites in the human genome.	Cell	2006
16362908	Improvement of TRANSFAC matrices using multiple local alignment of transcription factor binding site sequences.	Genome Inform	2005
15637633	Assessing computational tools for the discovery of transcription factor binding sites.	Nat Biotechnol	2005
15215387	SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation.	Nucleic Acids Res	2004
15215422	MotifViz: an analysis and visualization tool for motif discovery.	Nucleic Acids Res	2004
14988425	Detection of functional DNA motifs via statistical over-representation.	Nucleic Acids Res	2004
17270873	Improvement of TRANSFAC matrices using multiple local alignment of transcription factor binding site sequences.	Conf Proc IEEE Eng Med Biol Soc	2004
15712126	Gene expression module discovery using gibbs sampling.	Genome Inform	2004