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Author Details

Ryan E Mills
University of Michigan Medical School ann arbor
2003
60
35
PMIDPaper TitleJournal TitlePublished Year
36778249Somatic nuclear mitochondrial DNA insertions are prevalent in the human brain and accumulate over time in fibroblasts.bioRxiv2023
36945473Mapping the Complex Genetic Landscape of Human Neurons.bioRxiv2023
37205709Candida albicans selection for human commensalism results in substantial within-host diversity without decreasing fitness for invasive disease.PLoS Biol2023
34702772Early HPV ctDNA Kinetics and Imaging Biomarkers Predict Therapeutic Response in p16+ Oropharyngeal Squamous Cell Carcinoma.Clin Cancer Res2022
36366450Analysis of Human Papilloma Virus Content and Integration in Mucoepidermoid Carcinoma.Viruses2022
34117247Cas9 targeted enrichment of mobile elements using nanopore sequencing.Nat Commun2021
33789087Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies.Am J Hum Genet2021
33632895Haplotype-resolved diverse human genomes and integrated analysis of structural variation.Science2021
34706748SquiggleNet: real-time, direct classification of nanopore signals.Genome Biol2021
32541955A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
33575633Characterization of nuclear mitochondrial insertions in the whole genomes of primates.NAR Genom Bioinform2020
31729472Structural variation in the sequencing era.Nat Rev Genet2020
31853540Identification and characterization of occult human-specific LINE-1 insertions using long-read sequencing technology.Nucleic Acids Res2020
33062306Association of CNVs with methylation variation.NPJ Genom Med2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
30578782Constitutively Higher Level of GSTT2 in Esophageal Tissues From African Americans Protects Cells Against DNA Damage.Gastroenterology2019
31886876Prognostic model for multiple myeloma progression integrating gene expression and clinical features.Gigascience2019
31548405RNA ligation precedes the retrotransposition of U6/LINE-1 chimeric RNA.Proc Natl Acad Sci U S A2019
31109297Translation of upstream open reading frames in a model of neuronal differentiation.BMC Genomics2019
29559002FusorSV: an algorithm for optimally combining data from multiple structural variation detection methods.Genome Biol2018
28873962A recurrence-based approach for validating structural variation using long-read sequencing technology.Gigascience2017
28450582Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network.Science2017
29163793Rapid, ultra low coverage copy number profiling of cell-free DNA as a precision oncology screening strategy.Oncotarget2017
28855259The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology.Genome Res2017
27287201Resolving complex structural genomic rearrangements using a randomized approach.Genome Biol2016
27828722Genetics of Combined Pituitary Hormone Deficiency: Roadmap into the Genome Era.Endocr Rev2016
27884106SPECtre: a spectral coherence--based classifier of actively translated transcripts from ribosome profiling sequence data.BMC Bioinformatics2016
27774284CodonShuffle: a tool for generating and analyzing synonymously mutated sequences.Virus Evol2015
26432246An integrated map of structural variation in 2,504 human genomes.Nature2015
23778870Does germ-line deletion of the PIP gene constitute a widespread risk for cancer?Eur J Hum Genet2014
25279985Cryptic and complex chromosomal aberrations in early-onset neuropsychiatric disorders.Am J Hum Genet2014
25348406The genomic landscape of polymorphic human nuclear mitochondrial insertions.Nucleic Acids Res2014
24763686Increased genomic integrity of an improved protein-based mouse induced pluripotent stem cell method compared with current viral-induced strategies.Stem Cells Transl Med2014
23517041Copy number variation prevalence in known asthma genes and their impact on asthma susceptibility.Clin Exp Allergy2013
24014587Primate genome architecture influences structural variation mechanisms and functional consequences.Proc Natl Acad Sci U S A2013
23602499CGG repeat-associated translation mediates neurodegeneration in fragile X tremor ataxia syndrome.Neuron2013
23656838Copy number variation genotyping using family information.BMC Bioinformatics2013
22203992Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis.Proc Natl Acad Sci U S A2012
22797897Regulatory element copy number differences shape primate expression profiles.Proc Natl Acad Sci U S A2012
22388000Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration.Nat Genet2012
21460062Natural genetic variation caused by small insertions and deletions in the human genome.Genome Res2011
21627829Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection.Genome Biol2011
21552272Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants.Nat Biotechnol2011
21293372Mapping copy number variation by population-scale genome sequencing.Nature2011
20028483Expanding the definition of the classical bipartite nuclear localization signal.Traffic2010
20858594Small insertions and deletions (INDELs) in human genomes.Hum Mol Genet2010
20603005Natural mutagenesis of human genomes by endogenous retrotransposons.Cell2010
20364138Discovery of common Asian copy number variants using integrated high-resolution array CGH and massively parallel DNA sequencing.Nat Genet2010
19587683A highly annotated whole-genome sequence of a Korean individual.Nature2009
18343812A PY-NLS nuclear targeting signal is required for nuclear localization and function of the Saccharomyces cerevisiae mRNA-binding protein Hrp1.J Biol Chem2008
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Collaborators

Charles Lee
Co-authored papers 9
Weichen Zhou
Chengdu First People's Hospital
Co-authored papers 8
Jeffrey M Kidd
University of Michigan Medical School ann arbor
Co-authored papers 7
Mark Gerstein
Yale University
Co-authored papers 6
Qihui Zhu
Institute of Oceanology, Chinese Academy of Sciences
Co-authored papers 6
William S Pittard
Rollins School of Public Health, Emory University
Co-authored papers 6
Mark Borodovsky
Georgia Institute of Technology
Co-authored papers 5
Mark J P Chaisson
University of Southern California
Co-authored papers 5
Jan O Korbel
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
Ken Chen
University of Texas MD Anderson Cancer Center
Co-authored papers 4
Can Alkan
Bilkent University
Co-authored papers 4
Alexej Abyzov
Co-authored papers 4
Tobias Marschall
Center for Digital Medicine, Heinrich Heine University Dusseldorf
Co-authored papers 4
Evan E Eichler
University of Washington
Co-authored papers 4
Matthew E Hurles
Wellcome Sanger Institute
Co-authored papers 3
Aaron M Wenger
Stanford School of Medicine
Co-authored papers 3
Christopher E Mason
Feil Family Brain and Mind Research Institute.
Co-authored papers 3
Alexander E Urban
Co-authored papers 3
Steven A McCarroll
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Adrian M St??tz
St. Anna Children's Cancer Research Institute (CCRI)
Co-authored papers 3
Joyce Lee
Co-authored papers 3
Chengsheng Zhang
Co-authored papers 3
Ali Bashir
Google Accelerated Science Team, Google Inc
Co-authored papers 3
Tobias Rausch
University of Heidelberg
Co-authored papers 3
Iman Hajirasouliha
Institute for Computational Biomedicine
Co-authored papers 3
Xian Fan
Rice University
Co-authored papers 3
Kai Ye
Co-authored papers 3
Nancy F Hansen
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
Oliver Stegle
Wellcome Sanger Institute
Co-authored papers 2
Alexandre Rouette
Charles-Bruneau Cancer Center, Centre Hospitalier Universitaire (CHU) Sainte-Justine
Co-authored papers 2
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