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Author Details

Nathan D Grubaugh
Yale School of Public Health
2013
140
44
Wade Schulz (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36299420Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus.medRxiv2023
37808797Survey of white-footed mice in Connecticut, USA reveals low SARS-CoV-2 seroprevalence and infection with divergent betacoronaviruses.bioRxiv2023
37798265Viral kinetics of sequential SARS-CoV-2 infections.Nat Commun2023
37845201Assessing the global risk of typhoid outbreaks caused by extensively drug resistant Salmonella Typhi.Nat Commun2023
37651317Leveraging insect-specific viruses to elucidate mosquito population structure and dynamics.PLoS Pathog2023
37986857Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean.medRxiv2023
37873191DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virus.medRxiv2023
36945576Dynamics of Eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States.medRxiv2023
37310918Development of an amplicon-based sequencing approach in response to the global emergence of mpox.PLoS Biol2023
37040418Phylogeographic reconstruction of the emergence and spread of Powassan virus in the northeastern United States.Proc Natl Acad Sci U S A2023
36974986Nonsystematic Reporting Biases of the SARS-CoV-2 Variant Mu Could Impact Our Understanding of the Epidemiological Dynamics of Emerging Variants.Genome Biol Evol2023
37295427Dynamics of eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States.Curr Biol2023
37327781Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients.Cell Rep Med2023
36753510Genomic and phenotypic analyses suggest moderate fitness differences among Zika virus lineages.PLoS Negl Trop Dis2023
36448812Genome Sequence of a Recombinant SARS-CoV-2 Lineage XAM (BA.1.1/BA.2.9) Strain from a Clinical Sample in Santo Domingo, Dominican Republic.Microbiol Resour Announc2023
36817891Routine saliva testing for SARS-CoV-2 in children: Methods for partnering with community childcare centers.Front Public Health2023
36921604Toward a global virus genomic surveillance network.Cell Host Microbe2023
36586415Nasal host response-based screening for undiagnosed respiratory viruses: a pathogen surveillance and detection study.Lancet Microbe2023
36848460Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions.JMIR Form Res2023
36692472Powassan Virus Lineage I in Field-Collected Dermacentor variabilis Ticks, New York, USA.Emerg Infect Dis2023
36821889Incorporating variant frequencies data into short-term forecasting for COVID-19 cases and deaths in the USA: a deep learning approach.EBioMedicine2023
36791724Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.Cell Rep Med2023
34453431Severe Acute Respiratory Syndrome Coronavirus 2 Reinfection: A Case Series From a 12-Month Longitudinal Occupational Cohort.Clin Infect Dis2022
35480627Comparative transmissibility of SARS-CoV-2 variants Delta and Alpha in New England, USA.Cell Rep Med2022
35675696Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Outbreak at a College With High Coronavirus Disease 2019 (COVID-19) Vaccination Coverage-Connecticut, August 2021-September 2021.Clin Infect Dis2022
35582905Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1.J Clin Microbiol2022
35547854Partial ORF1ab Gene Target Failure with Omicron BA.2.12.1.medRxiv2022
35545661Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota.Commun Biol2022
35378749Insights into the limited global spread of the immune evasive SARS-CoV-2 variant Mu.medRxiv2022
35542310Sequencing SARS-CoV-2 genomes from saliva.Virus Evol2022
35399324Rapid emergence of SARS-CoV-2 Omicron variant is associated with an infection advantage over Delta in vaccinated persons.Med2022
35668119Omicron-specific mRNA vaccination alone and as a heterologous booster against SARS-CoV-2.Nat Commun2022
35853867Heterotypic vaccination responses against SARS-CoV-2 Omicron BA.2.Cell Discov2022
35421340Translating virus evolution into epidemiology.Cell Host Microbe2022
36445125Identification of Human Monkeypox Virus Genome Deletions That Impact Diagnostic Assays.J Clin Microbiol2022
36417936Daily Rapid Antigen Exit Testing to Tailor University COVID-19 Isolation Policy.Emerg Infect Dis2022
36277835Interactions between seasonal temperature variation and temporal synchrony drive increased arbovirus co-infection incidence.R Soc Open Sci2022
36383192Quantifying the impact of immune history and variant on SARS-CoV-2 viral kinetics and infection rebound: A retrospective cohort study.Elife2022
36220819Bivalent mRNA vaccine booster induces robust antibody immunity against Omicron lineages BA.2, BA.2.12.1, BA.2.75 and BA.5.Cell Discov2022
36385137Global disparities in SARS-CoV-2 genomic surveillance.Nat Commun2022
35064939Clinical effectiveness of additional primary SARS-CoV-2 vaccine doses for solid organ transplant recipients.Clin Transplant2022
35064122Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19.Nat Commun2022
35238933Assessment of Clinical Effectiveness of BNT162b2 COVID-19 Vaccine in US Adolescents.JAMA Netw Open2022
34969164An outbreak of SARS-CoV-2 on a transplant unit in the early vaccination era.Transpl Infect Dis2022
35337266Evaluation of saliva self-collection devices for SARS-CoV-2 diagnostics.BMC Infect Dis2022
35051990Neutralizing antibodies against the SARS-CoV-2 Delta and Omicron variants following heterologous CoronaVac plus BNT162b2 booster vaccination.Nat Med2022
35194606Omicron-specific mRNA vaccination alone and as a heterologous booster against SARS-CoV-2.bioRxiv2022
34757384A stem-loop RNA RIG-I agonist protects against acute and chronic SARS-CoV-2 infection in mice.J Exp Med2022
34718647Longitudinal Immune Profiling of a Severe Acute Respiratory Syndrome Coronavirus 2 Reinfection in a Solid Organ Transplant Recipient.J Infect Dis2022
33420058Asynchronicity of endemic and emerging mosquito-borne disease outbreaks in the Dominican Republic.Nat Commun2021
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Collaborators

Chantal B F Vogels
Yale School of Public Health
Co-authored papers 55
Joseph R Fauver
University of Nebraska Medical Center
Co-authored papers 37
Albert I Ko
Instituto Goncalo Moniz, Yale School of Public Health
Co-authored papers 32
Anne L Wyllie
Yale School of Public Health
Co-authored papers 26
Akiko Iwasaki
Yale University
Co-authored papers 25
Shelli F Farhadian
Yale School of Medicine
Co-authored papers 23
Arnau Casanovas-Massana
School of Public Health, Yale University
Co-authored papers 22
Anderson F Brito
Yale School of Medicine, USA Instituto Todos pela Saude
Co-authored papers 18
Mary E Petrone
Sydney Institute for Infectious Diseases, The University of Sydney
Co-authored papers 18
Tara Alpert
Yale School of Public Health
Co-authored papers 18
Isabel M Ott
Yale School of Public Health
Co-authored papers 16
Charles S Dela Cruz
Department of Microbial Pathogenesis Yale University New Haven
Co-authored papers 14
Carolina Lucas
Yale School of Medicine
Co-authored papers 14
Craig B Wilen
Yale School of Medicine
Co-authored papers 12
Saad B Omer
Yale School of Public Health
Co-authored papers 12
Marie L Landry
Yale School of Medicine
Co-authored papers 11
Tianyang Mao
Yale University School of Medicine
Co-authored papers 10
Adam J Moore
Yale School of Public Health
Co-authored papers 10
Anne M Hahn
Yale School of Public Health
Co-authored papers 9
M Catherine Muenker
Yale School of Public Health
Co-authored papers 9
Aaron M Ring
Yale University School of Medicine
Co-authored papers 9
Chrispin Chaguza
Yale School of Public Health, YaleUniversity
Co-authored papers 9
Santos Bermejo
Yale University
Co-authored papers 9
David R Peaper
Yale University School of Medicine
Co-authored papers 8
Maria Tokuyama
Yale University School of Medicine
Co-authored papers 8
Karthik Gangavarapu
the Scripps Research Institute
Co-authored papers 8
Ji Eun Oh
College of Science & Industry Convergence, Ewha Womans University
Co-authored papers 7
Patrick Wong
Yale School of Medicine
Co-authored papers 7
Wade Schulz (CM4AI)
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Release 1.2