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Author Details

Astrid Laegreid
Norwegian University of Science and Technology
1983
68
23
Dexter Pratt (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37992291TFCheckpoint database update, a cross-referencing system for transcription factors from human, mouse and rat.Nucleic Acids Res2024
36648961Characterisation of Colorectal Cancer Cell Lines through Proteomic Profiling of Their Extracellular Vesicles.Proteomes2023
34875418ExTRI: Extraction of transcription regulation interactions from literature.Biochim Biophys Acta Gene Regul Mech2022
32637990The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).Bioinformatics2021
34710644Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.Biochim Biophys Acta Gene Regul Mech2021
34673265A GO catalogue of human DNA-binding transcription factors.Biochim Biophys Acta Gene Regul Mech2021
34461313Gene Ontology representation for transcription factor functions.Biochim Biophys Acta Gene Regul Mech2021
32468194Silencing trust: confidence and familiarity in re-engineering knowledge infrastructures.Med Health Care Philos2020
33239689Author Correction: High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids.Sci Rep2020
32665693High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids.Sci Rep2020
32848834Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction.Front Physiol2020
30793173CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination.Bioinformatics2019
31664030A high-throughput drug combination screen of targeted small molecule inhibitors in cancer cell lines.Sci Data2019
28444126CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets.Bioinformatics2017
27270715Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.Database (Oxford)2016
26205660The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.BMC Syst Biol2015
26317215Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.PLoS Comput Biol2015
25384047Salt-inducible kinase 1 (SIK1) is induced by gastrin and inhibits migration of gastric adenocarcinoma cells.PLoS One2014
25490885Finding gene regulatory network candidates using the gene expression knowledge base.BMC Bioinformatics2014
23408059Gastrin-induced proliferation involves MEK partner 1 (MP1).In Vitro Cell Dev Biol Anim2013
24086717NR4A2 is regulated by gastrin and influences cellular responses of gastric adenocarcinoma cells.PLoS One2013
23933972TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.Bioinformatics2013
23981286Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.Database (Oxford)2013
23975504Platelet-activating factor induces proliferation in differentiated keratinocytes.Mol Cell Biochem2013
23805861The duration of gastrin treatment affects global gene expression and molecular responses involved in ER stress and anti-apoptosis.BMC Genomics2013
21995960Gastrin upregulates the prosurvival factor secretory clusterin in adenocarcinoma cells and in oxyntic mucosa of hypergastrinemic rats.Am J Physiol Gastrointest Liver Physiol2012
20041255Platelet activating factor stimulates arachidonic acid release in differentiated keratinocytes via arachidonyl non-selective phospholipase A2.Arch Dermatol Res2010
20387150Functional studies on RNA-transfected cell microarrays.Methods Mol Biol2010
19603073A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.PLoS One2009
18679062Changes in gene expression of gastric mucosa during therapeutic acid inhibition.Eur J Gastroenterol Hepatol2008
18827820Identification of novel neuroendocrine-specific tumour genes.Br J Cancer2008
18628295Functional studies on transfected cell microarray analysed by linear regression modelling.Nucleic Acids Res2008
17185632Inducible cAMP early repressor suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression.Am J Physiol Gastrointest Liver Physiol2007
17949480Optimization of cDNA microarrays procedures using criteria that do not rely on external standards.BMC Genomics2007
17340624Inducible cAMP early repressor splice variants ICER I and IIgamma both repress transcription of c-fos and chromogranin A.J Cell Biochem2007
16168978Gene expression analysis and clinical diagnosis.Clin Chim Acta2006
17062145GeneTools--application for functional annotation and statistical hypothesis testing.BMC Bioinformatics2006
16787968Additional gene ontology structure for improved biological reasoning.Bioinformatics2006
16753336Aetiology-specific patterns in end-stage heart failure patients identified by functional annotation and classification of microarray data.Eur J Heart Fail2006
15846300Identification of novel growth factor-responsive genes in neuroendocrine gastrointestinal tumour cells.Br J Cancer2005
15943902Distinct differences between TNF receptor 1- and TNF receptor 2-mediated activation of NFkappaB.J Biochem Mol Biol2005
15827235Molecular characterization of rat gastric mucosal response to potent acid inhibition.Physiol Genomics2005
15333145XHM: a system for detection of potential cross hybridizations in DNA microarrays.BMC Bioinformatics2004
15191615Miniaturized fluorescent RNA dot blot method for rapid quantitation of gene expression.BMC Biotechnol2004
15183539Gene expression based classification of gastric carcinoma.Cancer Lett2004
12801872Learning rule-based models of biological process from gene expression time profiles using gene ontology.Bioinformatics2003
12851464Liver gene expression in rats in response to the peroxisome proliferator-activated receptor-alpha agonist ciprofibrate.Physiol Genomics2003
12242039Expression of chromogranin A and somatostatin receptors in pancreatic AR42J cells.Mol Cell Endocrinol2002
11402749[Measurement of gene activity by DNA microarrays].Tidsskr Nor Laegeforen2001
11262949Predicting gene function from gene expressions and ontologies.Pac Symp Biocomput2001
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Collaborators

Martin Kuiper
Norwegian University of Science and Technology
Co-authored papers 15
??smund Flobak
Norwegian University of Science and Technology
Co-authored papers 9
Jan Komorowski
Co-authored papers 8
Ruth C Lovering
University College London, Institute for Cardiovascular Science
Co-authored papers 5
Marcio Luis Acencio
Norwegian University of Science and Technology
Co-authored papers 4
Pascale Gaudet
University of Geneva
Co-authored papers 4
Vasundra Tour??
Norwegian University of Science and Technology (NTNU)
Co-authored papers 3
Henning Hermjakob
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Colin Logie
Radboud Institute for Molecular Science, Radboud University
Co-authored papers 3
Paul D Thomas
University of Southern California
Co-authored papers 3
Miguel Vazquez
Norwegian University of Science and Technology
Co-authored papers 3
Sandra Orchard
EMBL's European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Denis Thieffry
Institut de Biologie de l'Ecole Normale Superieure, Inserm, CNRS, Universite PSL
Co-authored papers 2
Judith A Blake
Co-authored papers 2
Pablo Porras
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Noemi Del-Toro
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 2
Rachael P Huntley
Institute of Cardiovascular Science, University College London
Co-authored papers 2
Glyn Bradley
Co-authored papers 2
Tor-Kristian Jenssen
Norwegian University of Science and Technology
Co-authored papers 2
Steven Vercruysse
Norwegian University of Science and Technology (NTNU)
Co-authored papers 2
Luana Licata
University of Tor Vergata
Co-authored papers 2
Karen R Christie
Stanford University Medical School
Co-authored papers 2
Eivind Hovig
Center for Bioinformatics, University of Oslo
Co-authored papers 2
Livia Perfetto
Department of Biology and Biotechnologies "Charles Darwin", La Sapienza University
Co-authored papers 2
Krzysztof Fidelis
University of California davis
Co-authored papers 1
Oriol Fornes
BC Children's Hospital Research Institute, University of British Columbia
Co-authored papers 1
Ola Myklebost
Institute for Cancer Research, Oslo University Hospital
Co-authored papers 1
Claudine Chaouiya
Aix Marseille University CNRS
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Anne Niknejad
University of Lausanne
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Release 1.2