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Author Details

Oriol Fornes
BC Children's Hospital Research Institute, University of British Columbia
2008
36
15
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37962376JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.Nucleic Acids Res2024
36662884A multimorphic mutation in IRF4 causes human autosomal dominant combined immunodeficiency.Sci Immunol2023
37796837SBILib: a handle for protein modeling and engineering.Bioinformatics2023
37935654Transcriptional reprogramming by mutated IRF4 in lymphoma.Nat Commun2023
37370113ExplaiNN: interpretable and transparent neural networks for genomics.Genome Biol2023
37166953OnTarget: in silico design of MiniPromoters for targeted delivery of expression.Nucleic Acids Res2023
37260510Refining the genomic determinants underlying escape from X-chromosome inactivation.NAR Genom Bioinform2023
36884218Human germline heterozygous gain-of-function STAT6 variants cause severe allergic disease.J Exp Med2023
33257509Linkage analysis identifies an isolated strabismus locus at 14q12 overlapping with FOXG1 syndrome region.J Med Genet2022
34850907JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.Nucleic Acids Res2022
33368787GeneBreaker: Variant simulation to improve the diagnosis of Mendelian rare genetic diseases.Hum Mutat2021
33597016Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing.Epigenetics Chromatin2021
33531684Human MiniPromoters for ocular-rAAV expression in ON bipolar, cone, corneal, endothelial, Müller glial, and PAX6 cells.Gene Ther2021
33636385Human progranulin-expressing mice as a novel tool for the development of progranulin-modulating therapeutics.Neurobiol Dis2021
34673265A GO catalogue of human DNA-binding transcription factors.Biochim Biophys Acta Gene Regul Mech2021
34579793Biologically relevant transfer learning improves transcription factor binding prediction.Genome Biol2021
33937764On the use of direct-coupling analysis with a reduced alphabet of amino acids combined with super-secondary structure motifs for protein fold prediction.NAR Genom Bioinform2021
33407073SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions.BMC Bioinformatics2021
32393327Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study.Genome Biol2020
33575598On the prediction of DNA-binding preferences of C2H2-ZF domains using structural models: application on human CTCF.NAR Genom Bioinform2020
31701148JASPAR 2020: update of the open-access database of transcription factor binding profiles.Nucleic Acids Res2020
30541050Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants.Bioinformatics2019
30062914New MiniPromoter Ple345 (NEFL) Drives Strong and Specific Expression in Retinal Ganglion Cells of Mouse and Primate Retina.Hum Gene Ther2019
29161433JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.Nucleic Acids Res2018
29934305c-Myc is a novel <i>Leishmania</i> virulence factor by proxy that targets the host miRNA system and is essential for survival in human macrophages.J Biol Chem2018
30040077MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations.Sci Data2018
29140473JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.Nucleic Acids Res2018
27284060InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.Biochem Soc Trans2016
26531826JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles.Nucleic Acids Res2016
27721464Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.Nat Commun2016
27492288Evaluating the impact of single nucleotide variants on transcription factor binding.Nucleic Acids Res2016
24629186On the use of knowledge-based potentials for the evaluation of models of protein-protein, protein-DNA, and protein-RNA interactions.Adv Protein Chem Struct Biol2014
27477264Networks of ProteinProtein Interactions: From Uncertainty to Molecular Details.Mol Inform2012
19536199Backup in gene regulatory networks explains differences between binding and knockout results.Mol Syst Biol2009
19357100ModLink+: improving fold recognition by using protein-protein interactions.Bioinformatics2009
18559317Knowledge environments representing molecular entities for the virtual physiological human.Philos Trans A Math Phys Eng Sci2008
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Collaborators

Wyeth W Wasserman
BC Children's Hospital Research Institute, University of British Columbia
Co-authored papers 23
Anthony Mathelier
University of Oslo
Co-authored papers 11
Baldo Oliva
Universitat Pompeu Fabra
Co-authored papers 11
Jaume Bonet
Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne
Co-authored papers 7
Albin Sandelin
University of Copenhagen
Co-authored papers 6
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 6
Narcis Fernandez-Fuentes
Institute of Biological, Aberystwyth University
Co-authored papers 5
David J Arenillas
BC Children's Hospital Research Institute, University of British Columbia
Co-authored papers 5
Altuna Akalin
Berlin Institute for Medical Systems Biology
Co-authored papers 2
Sergio D Rosenzweig
National Institute of Allergy and Infectious Diseases
Co-authored papers 2
Ivan V Kulakovskiy
Vavilov Institute of General Genetics, Russian Academy of Sciences
Co-authored papers 2
Sara Mostafavi
University of British Columbia and BC Children's Hospital
Co-authored papers 2
Vsevolod J Makeev
Vavilov Institute of General Genetics, Russian Academy of Sciences
Co-authored papers 1
Alex Ignatchenko
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Eli A Stahl
Co-authored papers 1
Ziv Bar-Joseph
Carnegie Mellon University
Co-authored papers 1
Gaetan Burgio
College of Health and Medicine, The Australian National University
Co-authored papers 1
Anne Barton
Co-authored papers 1
Stephen H Friend
University of Oxford
Co-authored papers 1
Gustavo Stolovitzky
IBM T.J. Watson Research Center
Co-authored papers 1
Stefania Pittaluga
National Cancer Institute, National Institutes of Health
Co-authored papers 1
Sveinung Gundersen
Center for Bioinformatics, University of Oslo
Co-authored papers 1
Nancy A Shadick
Co-authored papers 1
Michael E Weinblatt
Co-authored papers 1
Venkatachalapathy S K Balagurusamy
IBM T.J. Watson Research Center - 218
Co-authored papers 1
Yuanfang Guan
University of Michigan ann arbor
Co-authored papers 1
Ram??n Arag????s
Universitat Pompeu Fabra-IMIM
Co-authored papers 1
Thea Norman
Bill & Melinda Gates Foundation
Co-authored papers 1
Eivind Hovig
Center for Bioinformatics, University of Oslo
Co-authored papers 1
Jing Tang
University of Helsinki
Co-authored papers 1
Release 1.2