Author details

Full Name

Jana Hertel

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
38011648	deepFPlearn +: Enhancing Toxicity Prediction Across the Chemical Universe Using Graph Neural Networks.		2023
34432281	Evolution and Phylogeny of MicroRNAs - Protocols, Pitfalls, and Problems.	Methods in Molecular Biology	2022
35849097	AI for predicting chemical-effect associations at the chemical universe level-deepFPlearn.	Briefings in Bioinformatics	2022
36261438	HBEGF-TNF induce a complex outer retinal pathology with photoreceptor cell extrusion in human organoids.	Nature Communications	2022
33996806	Mouse Retinal Organoid Growth and Maintenance in Longer-Term Culture.	Frontiers in Cell and Developmental Biology	2021
34108957	A Multi-Omics Analysis of Mucosal-Associated-Invariant T Cells Reveals Key Drivers of Distinct Modes of Activation.	Frontiers in Immunology	2021
32756376	Potential Co-Factors of an Intraoral Contact Allergy-A Cross-Sectional Study.	Dentistry Journal	2020
32336248	A probabilistic version of Sankoff's maximum parsimony algorithm.	Journal of Bioinformatics and Computational Biology	2020
32034435	Prospects and challenges of multi-omics data integration in toxicology.	Archives of Toxicology	2020
30387691	Specific induction of the unique GPR15 expression in heterogeneous blood lymphocytes by tobacco smoking.	Biomarkers	2019
31830916	uap: reproducible and robust HTS data analysis.	BMC Bioinformatics	2019
29196413	The fungal snoRNAome.	RNA	2018
29657275	Evolution of Fungal U3 snoRNAs: Structural Variation and Introns.	Non-coding RNA	2017
28637930	Towards a Consistent, Quantitative Evaluation of MicroRNA Evolution.	Journal of integrative bioinformatics	2017
28105919	SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification.	BMC Bioinformatics	2016
27230688	Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.	Nat Genet	2016
27174936	An updated human snoRNAome.	Nucleic Acids Research	2016
26828373	U6 snRNA intron insertion occurred multiple times during fungi evolution.	RNA Biology	2016
26950095	The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.	Nat Genet	2016
27881081	Phylogenetic distribution of plant snoRNA families.	BMC Genomics	2016
26282327	Third Report on Chicken Genes and Chromosomes 2015.	Cytogenet Genome Res	2015
25822729	Conservation and losses of non-coding RNAs in avian genomes.	PLoS ONE	2015
25780960	The Expansion of Animal MicroRNA Families Revisited.	Life	2015
24639171	Computational prediction of microRNA genes.	Methods in Molecular Biology	2014
25514182	The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies.	Mol Cell	2014
24162733	Matching of Soulmates: coevolution of snoRNAs and their targets.	Molecular Biology and Evolution	2014
24174566	snoStrip: a snoRNA annotation pipeline.		2014
22617875	Evolution of the let-7 microRNA family.	RNA Biology	2012
22704986	Genomic and morphological evidence converge to resolve the enigma of Strepsiptera.	Curr Biol	2012
20015949	RNAsnoop: efficient target prediction for H/ACA snoRNAs.		2010
19814823	Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum.	BMC Genomics	2009
19584066	Evidence for human microRNA-offset RNAs in small RNA sequencing data.		2009
19723687	Accurate and efficient reconstruction of deep phylogenies from structured RNAs.	Nucleic Acids Research	2009
19151082	Non-coding RNA annotation of the genome of Trichoplax adhaerens.	Nucleic Acids Research	2009
18511233	NcDNAlign: plausible multiple alignments of non-protein-coding genomic sequences.	Genomics	2008
17611759	Variations on RNA folding and alignment: lessons from Benasque.	Journal of Mathematical Biology	2008
17895272	SnoReport: computational identification of snoRNAs with unknown targets.		2008
18346967	Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis.	Nucleic Acids Research	2008
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17568003	Structured RNAs in the ENCODE selected regions of the human genome.	Genome Res	2007
17996037	Computational RNomics of drosophilids.	BMC Genomics	2007
17171697	RNAs everywhere: genome-wide annotation of structured RNAs.	Journal of Experimental Zoology Part B: Molecular and Developmental Evolution	2007
17510325	RNA maps reveal new RNA classes and a possible function for pervasive transcription.	Science	2007
16480513	The expansion of the metazoan microRNA repertoire.	BMC Genomics	2006
16873472	Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data.		2006