Author details

Full Name

Fabio Rinaldi

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37819910	Challenges and best practices for digital unstructured data enrichment in health research: A systematic narrative review.		2023
35331131	Parallel sequence tagging for concept recognition.	BMC Bioinformatics	2022
36378522	Automatic Detection of Adverse Drug Events in Geriatric Care: Study Proposal.	JMIR Research Protocols	2022
35045882	An annotated dataset for extracting gene-melanoma relations from scientific literature.	Journal of Biomedical Semantics	2022
34638169	Improving classification of low-resource COVID-19 literature by using Named Entity Recognition.		2021
34107445	Real-time geospatial surveillance of localized emotional stress responses to COVID-19: A proof of concept analysis.		2021
34001263	Learning adaptive representations for entity recognition in the biomedical domain.	Journal of Biomedical Semantics	2021
33453476	Factors associated with cattle necropsy submissions in Switzerland, and their importance for surveillance.	Preventive Veterinary Medicine	2021
33610879	MultiGBS: A multi-layer graph approach to biomedical summarization.	Journal of Biomedical Informatics	2021
34481058	Enhancing Biomedical Relation Extraction with Transformer Models using Shortest Dependency Path Features and Triplet Information.	Journal of Biomedical Informatics	2021
32634866	Editor's introduction to the special issue of the 6th Biomedical Linked Annotation Hackathon (BLAH6).	Genomics Inform	2020
31307127	Introduction to BLAH5 special issue: recent progress on interoperability of biomedical text mining.	Genomics Inform	2019
30958542	A new approach and gold standard toward author disambiguation in MEDLINE.	Journal of the American Medical Informatics Association : JAMIA	2019
31066697	Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review.	JMIR Med Inform	2019
30666476	OGER++: hybrid multi-type entity recognition.	Journal of Cheminformatics	2019
31307136	Improving spaCy dependency annotation and PoS tagging web service using independent NER services.		2019
29914502	The value of necropsy reports for animal health surveillance.	BMC Veterinary Research	2018
29122011	Entity recognition in the biomedical domain using a hybrid approach.	Journal of Biomedical Semantics	2017
28605770	Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis.	Database : the journal of biological databases and curation	2017
28605767	Strategies towards digital and semi-automated curation in RegulonDB.	Database : the journal of biological databases and curation	2017
28365731	Strategies towards digital and semi-automated curation in RegulonDB.	Database : the journal of biological databases and curation	2017
27589961	Overview of the interactive task in BioCreative V.	Database (Oxford)	2016
27402677	BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language.	Database : the journal of biological databases and curation	2016
27311444	Web Conversations About Complementary and Alternative Medicines and Cancer: Content and Sentiment Analysis.	Journal of Medical Internet Research	2016
26527724	RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.	Nucleic Acids Research	2016
24961236	BioC implementations in Go, Perl, Python and Ruby.	Database (Oxford)	2014
25472638	OntoGene web services for biomedical text mining.	BMC Bioinformatics	2014
24903516	Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12.	Database : the journal of biological databases and curation	2014
24980129	BioC interoperability track overview.	Database (Oxford)	2014
23396322	Using the OntoGene pipeline for the triage task of BioCreative 2012.	Database : the journal of biological databases and curation	2013
24048470	BioC: a minimalist approach to interoperability for biomedical text processing.	Database (Oxford)	2013
23046495	Ranking relations between diseases, drugs and genes for a curation task.	Journal of Biomedical Semantics	2012
22580177	Relation mining experiments in the pharmacogenomics domain.	Journal of Biomedical Informatics	2012
22529178	Using ODIN for a PharmGKB revalidation experiment.	Database (Oxford)	2012
22151872	Detection of interaction articles and experimental methods in biomedical literature.	BMC Bioinformatics	2011
22166494	Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.	J Biomed Semantics	2011
22166304	Towards mature use of semantic resources for biomedical analyses.	J Biomed Semantics	2011
21652190	Terminological resources for text mining over biomedical scientific literature.	Artificial Intelligence in Medicine	2011
22151968	BioCreative III interactive task: an overview.	BMC Bioinformatics	2011
22151929	The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.	BMC Bioinformatics	2011
22151901	The gene normalization task in BioCreative III.	BMC Bioinformatics	2011
20671319	OntoGene in BioCreative II.5.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2010
18834491	OntoGene in BioCreative II.		2008
17052900	Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach.	Artificial Intelligence in Medicine	2007
17134476	An environment for relation mining over richly annotated corpora: the case of GENIA.	BMC Bioinformatics	2006