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Author Details

J Michael Cherry
Stanford University
1981
124
52
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37173523Annotating and prioritizing human non-coding variants with RegulomeDB v.2.Nat Genet2023
36607068Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources.Genetics2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37173523Annotating and prioritizing human non-coding variants with RegulomeDB v.2.Nat Genet2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
36607068Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources.Genetics2023
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
34897464New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources.Genetics2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
34897464New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources.Genetics2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
35072136GA4GH: International policies and standards for data sharing across genomic research and healthcare.Cell Genom2021
35072136GA4GH: International policies and standards for data sharing across genomic research and healthcare.Cell Genom2021
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
31713622New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.Nucleic Acids Res2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
33186529Data Sanitization to Reduce Private Information Leakage from Functional Genomics.Cell2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
31713622New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.Nucleic Acids Res2020
33186529Data Sanitization to Reduce Private Information Leakage from Functional Genomics.Cell2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
31454399Integrative Meta-Assembly Pipeline (IMAP): Chromosome-level genome assembler combining multiple de novo assemblies.PLoS One2019
31751002The ENCODE Portal as an Epigenomics Resource.Curr Protoc Bioinformatics2019
31454399Integrative Meta-Assembly Pipeline (IMAP): Chromosome-level genome assembler combining multiple de novo assemblies.PLoS One2019
31751002The ENCODE Portal as an Epigenomics Resource.Curr Protoc Bioinformatics2019
29140510Saccharomyces genome database informs human biology.Nucleic Acids Res2018
29140510Saccharomyces genome database informs human biology.Nucleic Acids Res2018
29126249The Encyclopedia of DNA elements (ENCODE): data portal update.Nucleic Acids Res2018
29688362Updated regulation curation model at the Saccharomyces Genome Database.Database (Oxford)2018
29688363Prevention of data duplication for high throughput sequencing repositories.Database (Oxford)2018
29688362Updated regulation curation model at the Saccharomyces Genome Database.Database (Oxford)2018
29688363Prevention of data duplication for high throughput sequencing repositories.Database (Oxford)2018
29126249The Encyclopedia of DNA elements (ENCODE): data portal update.Nucleic Acids Res2018
27157655XenMine: A genomic interaction tool for the Xenopus community.Dev Biol2017
28552198Evaluating the Clinical Validity of Gene-Disease Associations: An Evidence-Based Framework Developed by the Clinical Genome Resource.Am J Hum Genet2017
28365727Curated protein information in the Saccharomyces genome database.Database (Oxford)2017
28365719Outreach and online training services at the Saccharomyces Genome Database.Database (Oxford)2017
28403240SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.PLoS One2017
27157655XenMine: A genomic interaction tool for the Xenopus community.Dev Biol2017
27794554RNAcentral: a comprehensive database of non-coding RNA sequences.Nucleic Acids Res2017
28132844Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy.Mol Cell2017
28365727Curated protein information in the Saccharomyces genome database.Database (Oxford)2017
28365719Outreach and online training services at the Saccharomyces Genome Database.Database (Oxford)2017
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Collaborators

Shuai Weng
Stanford University
Co-authored papers 35
David Botstein
Calico Life Sciences LLC
Co-authored papers 27
Stacia R Engel
Stanford University
Co-authored papers 27
Gail Binkley
Stanford University
Co-authored papers 26
Benjamin C Hitz
Stanford University School of Medicine
Co-authored papers 26
Eurie L Hong
Stanford University School of Medicine
Co-authored papers 25
Selina S Dwight
Stanford University School of Medicine
Co-authored papers 24
Rama Balakrishnan
Genentech Inc.
Co-authored papers 21
Robert S Nash
Stanford University
Co-authored papers 21
Edith D Wong
Stanford University
Co-authored papers 18
Stuart R Miyasato
Stanford University
Co-authored papers 18
Kalpana Karra
Stanford University
Co-authored papers 18
Marek S Skrzypek
Stanford University
Co-authored papers 17
Kara Dolinski
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 17
Maria C Costanzo
The Broad Institute of Harvard and MIT
Co-authored papers 16
Dianna G Fisk
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Catherine A Ball
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Karen R Christie
Stanford University Medical School
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J Seth Strattan
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Midori A Harris
University of Cambridge
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Julie Park
Stanford University
Co-authored papers 11
Mark Schroeder
Co-authored papers 10
Jean M Davidson
Stanford University School of Medicine
Co-authored papers 10
Anand Sethuraman
Stanford University School of Medicine
Co-authored papers 10
Jodi E Hirschman
Broad Institute of MIT and Harvard
Co-authored papers 9
Idan Gabdank
Co-authored papers 9
Pascale Gaudet
University of Geneva
Co-authored papers 8
Otto Jolanki
Co-authored papers 8
Alex Bateman
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 8
Suzanna E Lewis
Lawrence Berkeley National Laboratory
Co-authored papers 7
Release 1.2