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| 36326680 | Successful Treatment of Prolonged, Severe Coronavirus Disease 2019 Lower Respiratory Tract Disease in a B cell Acute Lymphoblastic Leukemia Patient With an Extended Course of Remdesivir and Nirmatrelvir/Ritonavir. | Clin Infect Dis | 2023 |
| 38019897 | A cohort-based study of host gene expression: tumor suppressor and innate immune/inflammatory pathways associated with the HIV reservoir size. | PLoS Pathog | 2023 |
| 37550333 | Comparing molnupiravir and nirmatrelvir/ritonavir efficacy and the effects on SARS-CoV-2 transmission in animal models. | Nat Commun | 2023 |
| 37503290 | Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. | bioRxiv | 2023 |
| 37728336 | Sensitivity of rapid antigen tests against SARS-CoV-2 Omicron and Delta variants. | J Clin Microbiol | 2023 |
| 37346095 | Respiratory syncytial virus and other respiratory virus infections in residents of homeless shelters - King County, Washington, 2019-2021. | Influenza Other Respir Viruses | 2023 |
| 37383248 | Successful Treatment of Persistent Symptomatic Coronavirus Disease 19 Infection With Extended-Duration Nirmatrelvir-Ritonavir Among Outpatients With Hematologic Cancer. | Open Forum Infect Dis | 2023 |
| 37074875 | A multiplexed barcode approach to simultaneously evaluate gene delivery by adeno-associated virus capsid variants in nonhuman primates. | Hepatol Commun | 2023 |
| 37466213 | Viral Resistance Analyses From the Remdesivir Phase 3 Adaptive COVID-19 Treatment Trial-1 (ACTT-1). | J Infect Dis | 2023 |
| 37099299 | Safety, Immunogenicity, and Efficacy of the NVX-CoV2373 COVID-19 Vaccine in Adolescents: A Randomized Clinical Trial. | JAMA Netw Open | 2023 |
| 37199630 | Liver-Humanized NSG-PiZ Mice Support the Study of Chronic Hepatitis B Virus Infection and Antiviral Therapies. | Microbiol Spectr | 2023 |
| 37398105 | Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features. | Res Sq | 2023 |
| 36695358 | Host variation in type I interferon signaling genes (MX1), C-C chemokine receptor type 5 gene, and major histocompatibility complex class I alleles in treated HIV+ noncontrollers predict viral reservoir size. | AIDS | 2023 |
| 36712077 | Differences in expression of tumor suppressor, innate immune, inflammasome, and potassium/gap junction channel host genes significantly predict viral reservoir size during treated HIV infection. | bioRxiv | 2023 |
| 36798414 | Sensitivity of Rapid Antigen Tests Against SARS-CoV-2 Omicron and Delta Variants. | medRxiv | 2023 |
| 36732066 | Genomic Analysis of Early Monkeypox Virus Outbreak Strains, Washington, USA. | Emerg Infect Dis | 2023 |
| 36596565 | Sentinel Surveillance System Implementation and Evaluation for SARS-CoV-2 Genomic Data, Washington, USA, 2020-2021. | Emerg Infect Dis | 2023 |
| 34166484 | Variants of Concern Are Overrepresented Among Postvaccination Breakthrough Infections of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Washington State. | Clin Infect Dis | 2022 |
| 35412591 | Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study. | Clin Infect Dis | 2022 |
| 35799885 | Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat. | Virus Evol | 2022 |
| 35766514 | A Method for Variant Agnostic Detection of SARS-CoV-2, Rapid Monitoring of Circulating Variants, and Early Detection of Emergent Variants Such as Omicron. | J Clin Microbiol | 2022 |
| 35502920 | Identification of Omicron-Delta Coinfections Using PCR-Based Genotyping. | Microbiol Spectr | 2022 |
| 35632815 | Molecular Analysis of SARS-CoV-2 Lineages in Armenia. | Viruses | 2022 |
| 35393464 | Host-pathogen dynamics in longitudinal clinical specimens from patients with COVID-19. | Sci Rep | 2022 |
| 35862190 | Herpes simplex virus lymphadenitis is associated with tumor reduction in a patient with chronic lymphocytic leukemia. | J Clin Invest | 2022 |
| 35749582 | The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington. | J Infect Dis | 2022 |
| 36451893 | Paxlovid-like nirmatrelvir/ritonavir fails to block SARS-CoV-2 transmission in ferrets. | bioRxiv | 2022 |
| 36561171 | Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county. | medRxiv | 2022 |
| 36150508 | Human Parainfluenza Virus in Homeless Shelters before and during the COVID-19 Pandemic, Washington, USA. | Emerg Infect Dis | 2022 |
| 35996440 | The clinical and genomic epidemiology of seasonal human coronaviruses in congregate homeless shelter settings: A repeated cross-sectional study. | Lancet Reg Health Am | 2022 |
| 36366490 | ORF-Interrupting Mutations in Monkeypox Virus Genomes from Washington and Ohio, 2022. | Viruses | 2022 |
| 36172135 | Safety, Immunogenicity and Efficacy of NVX-CoV2373 in Adolescents in PREVENT-19: A Randomized, Phase 3 Trial. | medRxiv | 2022 |
| 35863699 | Clinical Performance Characteristics of the Swift Normalase Amplicon Panel for Sensitive Recovery of Severe Acute Respiratory Syndrome Coronavirus 2 Genomes. | J Mol Diagn | 2022 |
| 36005759 | Chromosome-Specific Human Herpesvirus 6 Integration and Hematologic Malignancies. | J Virol | 2022 |
| 35075180 | Mutations in viral nucleocapsid protein and endoRNase are discovered to associate with COVID19 hospitalization risk. | Sci Rep | 2022 |
| 35006245 | Trajectory of Viral RNA Load Among Persons With Incident SARS-CoV-2 G614 Infection (Wuhan Strain) in Association With COVID-19 Symptom Onset and Severity. | JAMA Netw Open | 2022 |
| 35058348 | Measuring infectious SARS-CoV-2 in clinical samples reveals a higher viral titer:RNA ratio for Delta and Epsilon vs. Alpha variants. | Proc Natl Acad Sci U S A | 2022 |
| 35301314 | De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: a case report. | Nat Commun | 2022 |
| 35169803 | Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat. | bioRxiv | 2022 |
| 35341324 | The SARS-CoV-2 Omicron Variant Does Not Have Higher Nasal Viral Loads Compared to the Delta Variant in Symptomatic and Asymptomatic Individuals. | J Clin Microbiol | 2022 |
| 35194099 | Author Correction: Mutations in viral nucleocapsid protein and endoRNase are discovered to associate with COVID19 hospitalization risk. | Sci Rep | 2022 |
| 34862752 | Predicting infectivity: comparing four PCR-based assays to detect culturable SARS-CoV-2 in clinical samples. | EMBO Mol Med | 2022 |
| 33939799 | Retrospective Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Symptomatic Patients Prior to Widespread Diagnostic Testing in Southern California. | Clin Infect Dis | 2022 |
| 32722766 | Evolutionary History of Endogenous Human Herpesvirus 6 Reflects Human Migration out of Africa. | Mol Biol Evol | 2021 |
| 33855313 | Phylogenetic estimates of SARS-CoV-2 introductions into Washington State. | medRxiv | 2021 |
| 33849972 | SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98. | mBio | 2021 |
| 33637820 | Hospitalization and mortality associated with SARS-CoV-2 viral clades in COVID-19. | Sci Rep | 2021 |
| 35013735 | Phylogenetic estimates of SARS-CoV-2 introductions into Washington State. | Lancet Reg Health Am | 2021 |
| 34909781 | <i>De novo</i> emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: A case report. | medRxiv | 2021 |
| 34936652 | Treponema pallidum genome sequencing from six continents reveals variability in vaccine candidate genes and dominance of Nichols clade strains in Madagascar. | PLoS Negl Trop Dis | 2021 |