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Author Details

Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
1985
176
56
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36631751xcore: an R package for inference of gene expression regulators.BMC Bioinformatics2023
36631751xcore: an R package for inference of gene expression regulators.BMC Bioinformatics2023
37308486Targeting transglutaminase 2 mediated exostosin glycosyltransferase 1 signaling in liver cancer stem cells with acyclic retinoid.Cell Death Dis2023
36788249A dataset of definitive endoderm and hepatocyte differentiations from human induced pluripotent stem cells.Sci Data2023
37308486Targeting transglutaminase 2 mediated exostosin glycosyltransferase 1 signaling in liver cancer stem cells with acyclic retinoid.Cell Death Dis2023
36788249A dataset of definitive endoderm and hepatocyte differentiations from human induced pluripotent stem cells.Sci Data2023
35142952Prediction of transcription factors associated with DNA demethylation during human cellular development.Chromosome Res2022
35895506Host-Directed Targeting of LincRNA-MIR99AHG Suppresses Intracellular Growth of <i>Mycobacterium tuberculosis</i>.Nucleic Acid Ther2022
35508708GATA6 is predicted to regulate DNA methylation in an in vitro model of human hepatocyte differentiation.Commun Biol2022
36119114Lyl1-deficiency promotes inflammatory responses and increases mycobacterial burden in response to <i>Mycobacterium tuberculosis</i> infection in mice.Front Immunol2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
35146392SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data.iScience2022
35142952Prediction of transcription factors associated with DNA demethylation during human cellular development.Chromosome Res2022
35508708GATA6 is predicted to regulate DNA methylation in an in vitro model of human hepatocyte differentiation.Commun Biol2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
35895506Host-Directed Targeting of LincRNA-MIR99AHG Suppresses Intracellular Growth of <i>Mycobacterium tuberculosis</i>.Nucleic Acid Ther2022
36119114Lyl1-deficiency promotes inflammatory responses and increases mycobacterial burden in response to <i>Mycobacterium tuberculosis</i> infection in mice.Front Immunol2022
35146392SkewC: Identifying cells with skewed gene body coverage in single-cell RNA sequencing data.iScience2022
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
33784500Spliceostatin A interaction with SF3B limits U1 snRNP availability and causes premature cleavage and polyadenylation.Cell Chem Biol2021
33836165Development of p53 knockout U87MG cell line for unbiased drug delivery testing system using CRISPR-Cas9 and transcriptomic analysis.J Biotechnol2021
34745081Evaluation of Berberine as an Adjunct to TB Treatment.Front Immunol2021
34521352The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.BMC Genom Data2021
34739044IL-4i1 Regulation of Immune Protection During Mycobacterium tuberculosis Infection.J Infect Dis2021
33784500Spliceostatin A interaction with SF3B limits U1 snRNP availability and causes premature cleavage and polyadenylation.Cell Chem Biol2021
33836165Development of p53 knockout U87MG cell line for unbiased drug delivery testing system using CRISPR-Cas9 and transcriptomic analysis.J Biotechnol2021
34739044IL-4i1 Regulation of Immune Protection During Mycobacterium tuberculosis Infection.J Infect Dis2021
34521352The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background.BMC Genom Data2021
34745081Evaluation of Berberine as an Adjunct to TB Treatment.Front Immunol2021
32782148Transcriptome analysis reveals inadequate spermatogenesis and immediate radical immune reactions during organ culture in vitro spermatogenesis.Biochem Biophys Res Commun2020
32079618Recounting the FANTOM CAGE-Associated Transcriptome.Genome Res2020
32032507Widely Distributed Neurotensinergic Neurons in the Brainstem Regulate NREM Sleep in Mice.Curr Biol2020
33199820Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population.Sci Rep2020
33241095Time-course microarray transcriptome data of <i>in vitro</i> cultured testes and age-matched <i>in vivo</i> testes.Data Brief2020
32782148Transcriptome analysis reveals inadequate spermatogenesis and immediate radical immune reactions during organ culture in vitro spermatogenesis.Biochem Biophys Res Commun2020
32032507Widely Distributed Neurotensinergic Neurons in the Brainstem Regulate NREM Sleep in Mice.Curr Biol2020
32079618Recounting the FANTOM CAGE-Associated Transcriptome.Genome Res2020
33199820Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population.Sci Rep2020
33241095Time-course microarray transcriptome data of <i>in vitro</i> cultured testes and age-matched <i>in vivo</i> testes.Data Brief2020
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
31772269A framework for identification of on- and off-target transcriptional responses to drug treatment.Sci Rep2019
31719197Single-cell transcriptomics reveals expansion of cytotoxic CD4 T cells in supercentenarians.Proc Natl Acad Sci U S A2019
30542107Batf2 differentially regulates tissue immunopathology in Type 1 and Type 2 diseases.Mucosal Immunol2019
31188831An interferon-like small chemical compound CDM-3008 suppresses hepatitis B virus through induction of interferon-stimulated genes.PLoS One2019
31275609Combinatorial perturbation analysis reveals divergent regulations of mesenchymal genes during epithelial-to-mesenchymal transition.NPJ Syst Biol Appl2019
31019211OVOL2 induces mesenchymal-to-epithelial transition in fibroblasts and enhances cell-state reprogramming towards epithelial lineages.Sci Rep2019
30669987Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection.BMC Genomics2019
30941122Differential Targeting of c-Maf, Bach-1, and Elmo-1 by microRNA-143 and microRNA-365 Promotes the Intracellular Growth of Mycobacterium tuberculosis in Alternatively IL-4/IL-13 Activated Macrophages.Front Immunol2019
30664627C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.Nat Commun2019
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Collaborators

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 107
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 46
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 36
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 34
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 32
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 27
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 27
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 25
Mutsumi Kanamori-Katayama
Karolinska Institutet
Co-authored papers 22
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 22
Takahiro Suzuki
RIKEN Center for Integrated Medical Science (IMS) Yokohama City Kanagawa Japan.
Co-authored papers 22
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 21
Frank Brombacher
University of Cape Town
Co-authored papers 20
Reto Guler
International Centre for Genetic Engineering and Biotechnology
Co-authored papers 19
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 19
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 19
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 17
Atsutaka Kubosaki
National Institute of Health Sciences.
Co-authored papers 16
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 16
Masaaki Furuno
RIKEN Center for Integrative Medical Sciences
Co-authored papers 15
Yasuhiro Tomaru
Co-authored papers 15
Chikatoshi Kai
Co-authored papers 14
Shiro Fukuda
Graduate School of Medicine, Osaka University
Co-authored papers 14
Sebastian Schmeier
Massey University
Co-authored papers 14
Sugata Roy
RIKEN Center for Integrative Medical Sciences
Co-authored papers 13
Shintaro Katayama
Folkhalsan Research Center
Co-authored papers 13
Rintaro Saito
Institute for Advanced Biosciences, Keio University
Co-authored papers 13
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 13
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 12
Christine A Wells
The University of Melbourne
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Release 1.2