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Author Details

Tao Huan
University of British Columbia
2013
76
25
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37923467HDPairFinder: A data processing platform for hydrogen/deuterium isotopic labeling-based nontargeted analysis of trace-level amino-containing chemicals in environmental water.J Environ Sci (China)2024
37923467HDPairFinder: A data processing platform for hydrogen/deuterium isotopic labeling-based nontargeted analysis of trace-level amino-containing chemicals in environmental water.J Environ Sci (China)2024
36913238HExpPredict: <i>In Vivo</i> Exposure Prediction of Human Blood Exposome Using a Random Forest Model and Its Application in Chemical Risk Prioritization.Environ Health Perspect2023
37603462<i>De Novo</i> Cleaning of Chimeric MS/MS Spectra for LC-MS/MS-Based Metabolomics.Anal Chem2023
37653976Elucidation of Physiological, Transcriptomic and Metabolomic Salinity Response Mechanisms in <i>Medicago sativa</i>.Plants (Basel)2023
37611587Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression.Cell Rep2023
37094164The cell envelope of <i>Thermotogae</i> suggests a mechanism for outer membrane biogenesis.Proc Natl Acad Sci U S A2023
36913238HExpPredict: <i>In Vivo</i> Exposure Prediction of Human Blood Exposome Using a Random Forest Model and Its Application in Chemical Risk Prioritization.Environ Health Perspect2023
36972195Mechanistic Understanding of the Discrepancies between Common Peak Picking Algorithms in Liquid Chromatography-Mass Spectrometry-Based Metabolomics.Anal Chem2023
37055660BUDDY: molecular formula discovery via bottom-up MS/MS interrogation.Nat Methods2023
37110719Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data.Molecules2023
36786577Amino Acid Availability Determines Plant Immune Homeostasis in the Rhizosphere Microbiome.mBio2023
37653976Elucidation of Physiological, Transcriptomic and Metabolomic Salinity Response Mechanisms in <i>Medicago sativa</i>.Plants (Basel)2023
37611587Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression.Cell Rep2023
37603462<i>De Novo</i> Cleaning of Chimeric MS/MS Spectra for LC-MS/MS-Based Metabolomics.Anal Chem2023
37055660BUDDY: molecular formula discovery via bottom-up MS/MS interrogation.Nat Methods2023
37110719Evaluating Software Tools for Lipid Identification from Ion Mobility Spectrometry-Mass Spectrometry Lipidomics Data.Molecules2023
36972195Mechanistic Understanding of the Discrepancies between Common Peak Picking Algorithms in Liquid Chromatography-Mass Spectrometry-Based Metabolomics.Anal Chem2023
37094164The cell envelope of <i>Thermotogae</i> suggests a mechanism for outer membrane biogenesis.Proc Natl Acad Sci U S A2023
36786577Amino Acid Availability Determines Plant Immune Homeostasis in the Rhizosphere Microbiome.mBio2023
35323655JPA: Joint Metabolic Feature Extraction Increases the Depth of Chemical Coverage for LC-MS-Based Metabolomics and Exposomics.Metabolites2022
36109804Multi-omic profiling of the leukemic microenvironment shows bone marrow interstitial fluid is distinct from peripheral blood plasma.Exp Hematol Oncol2022
35657711Adaptive Box-Cox Transformation: A Highly Flexible Feature-Specific Data Transformation to Improve Metabolomic Data Normality for Better Statistical Analysis.Anal Chem2022
35523965SIMILE enables alignment of tandem mass spectra with statistical significance.Nat Commun2022
35639662MAFFIN: metabolomics sample normalization using maximal density fold change with high-quality metabolic features and corrected signal intensities.Bioinformatics2022
35502615Epigenetic aberrations of gene expression in a rat model of hepatocellular carcinoma.Epigenetics2022
35997016Addressing big data challenges in mass spectrometry-based metabolomics.Chem Commun (Camb)2022
35256147Radical fragment ions in collision-induced dissociation-based tandem mass spectrometry.Anal Chim Acta2022
35256134Comprehensive assessment of the diminished statistical power caused by nonlinear electrospray ionization responses in mass spectrometry-based metabolomics.Anal Chim Acta2022
35245044Paramounter: Direct Measurement of Universal Parameters To Process Metabolomics Data in a "White Box".Anal Chem2022
35323655JPA: Joint Metabolic Feature Extraction Increases the Depth of Chemical Coverage for LC-MS-Based Metabolomics and Exposomics.Metabolites2022
35502615Epigenetic aberrations of gene expression in a rat model of hepatocellular carcinoma.Epigenetics2022
35639662MAFFIN: metabolomics sample normalization using maximal density fold change with high-quality metabolic features and corrected signal intensities.Bioinformatics2022
35523965SIMILE enables alignment of tandem mass spectra with statistical significance.Nat Commun2022
35657711Adaptive Box-Cox Transformation: A Highly Flexible Feature-Specific Data Transformation to Improve Metabolomic Data Normality for Better Statistical Analysis.Anal Chem2022
36109804Multi-omic profiling of the leukemic microenvironment shows bone marrow interstitial fluid is distinct from peripheral blood plasma.Exp Hematol Oncol2022
35997016Addressing big data challenges in mass spectrometry-based metabolomics.Chem Commun (Camb)2022
35256147Radical fragment ions in collision-induced dissociation-based tandem mass spectrometry.Anal Chim Acta2022
35256134Comprehensive assessment of the diminished statistical power caused by nonlinear electrospray ionization responses in mass spectrometry-based metabolomics.Anal Chim Acta2022
35245044Paramounter: Direct Measurement of Universal Parameters To Process Metabolomics Data in a "White Box".Anal Chem2022
33355101No endospore formation confirmed in members of the phylum Proteobacteria.Appl Environ Microbiol2021
33739814Recognizing Contamination Fragment Ions in Liquid Chromatography-Tandem Mass Spectrometry Data.J Am Soc Mass Spectrom2021
34055742Global-Scale Metabolomic Profiling of Human Hair for Simultaneous Monitoring of Endogenous Metabolome, Short- and Long-Term Exposome.Front Chem2021
33465307DaDIA: Hybridizing Data-Dependent and Data-Independent Acquisition Modes for Generating High-Quality Metabolomic Data.Anal Chem2021
34270210ISFrag: De Novo Recognition of In-Source Fragments for Liquid Chromatography-Mass Spectrometry Data.Anal Chem2021
33784068SteroidXtract: Deep Learning-Based Pattern Recognition Enables Comprehensive and Rapid Extraction of Steroid-Like Metabolic Features for Automated Biology-Driven Metabolomics.Anal Chem2021
33459556System Biology-Guided Chemical Proteomics to Discover Protein Targets of Monoethylhexyl Phthalate in Regulating Cell Cycle.Environ Sci Technol2021
33992921Toxicity mechanisms of polystyrene microplastics in marine mussels revealed by high-coverage quantitative metabolomics using chemical isotope labeling liquid chromatography mass spectrometry.J Hazard Mater2021
33563786Endogenous Metabolites Released by Sanitized Sprouting Alfalfa Seed Inhibit the Growth of Salmonella enterica.mSystems2021
33929905Risk-Based Chemical Ranking and Generating a Prioritized Human Exposome Database.Environ Health Perspect2021
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Collaborators

Mingliang Fang
Nanyang Technological University, Fudan University
Co-authored papers 13
Hilary P Benton
Scripps Center for Metabolomics and Mass Spectrometry, The Scripps Research Institute
Co-authored papers 9
Gary Siuzdak
Scripps Center for Metabolomics and Mass Spectrometry, The Scripps Research Institute
Co-authored papers 9
Duane Rinehart
Scripps Center for Metabolomics, The Scripps Research Institute
Co-authored papers 7
Erica M Forsberg
Viral Information Institute, San Diego State University
Co-authored papers 6
Aries Aisporna
Scripps Center for Metabolomics and Mass Spectrometry, The Scripps Research Institute
Co-authored papers 5
Julijana Ivanisevic
University of Lausanne
Co-authored papers 3
Brian Hilmers
Center for Metabolomics and Mass Spectrometry, The Scripps Research Institute
Co-authored papers 3
Caroline H Johnson
Yale School of Public Health
Co-authored papers 3
Luke L Lairson
The Scripps Research Institute
Co-authored papers 3
Amelia Palermo
Co-authored papers 3
Pieter C Dorrestein
Co-authored papers 2
Laura J Niedernhofer
University of Minnesota
Co-authored papers 2
Michael Downes
Howard Hughes Medical Institute, Salk Institute for Biological Studies
Co-authored papers 2
Ronald M Evans
Co-authored papers 2
Gregory Krantz
Montana State University
Co-authored papers 2
Farris L Poole
University of Georgia
Co-authored papers 2
Michael P Thorgersen
University of Georgia
Co-authored papers 2
Michael W W Adams
University of Georgia
Co-authored papers 2
Paul D Robbins
University of Minnesota
Co-authored papers 2
Matthew W Fields
Center for Biofilm Engineering (CBE), Montana State University
Co-authored papers 2
Trent R Northen
Co-authored papers 2
Richard D Smith
Pacific Northwest National Laboratory
Co-authored papers 1
Shuzhao Li
Co-authored papers 1
Briana C Prager
Massachusetts General Hospital
Co-authored papers 1
Thomas Hartung
University of Konstanz
Co-authored papers 1
Dean A Troyer
Eastern Virginia Medical School
Co-authored papers 1
Aivett Bilbao
Co-authored papers 1
Claire O'Donovan
European Bioinformatics Institute
Co-authored papers 1
Maureen Kachman
Co-authored papers 1
Release 1.2