Skip to Main Content

Author Details

Hiromi Nishiyori
Center for Integrative Medical Sciences
2006
20
13
PMIDPaper TitleJournal TitlePublished Year
37398314CapTrap-Seq: A platform-agnostic and quantitative approach for high-fidelity full-length RNA transcript sequencing.bioRxiv2023
35961773Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs.Genome Res2022
35387384High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance.NAR Genom Bioinform2022
36577377Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types.Cell Rep2022
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
34382184Low Quantity Single Strand CAGE (LQ-ssCAGE) Maps Regulatory Enhancers and Promoters.Methods Mol Biol2021
32124327Cap Analysis of Gene Expression (CAGE): A Quantitative and Genome-Wide Assay of Transcription Start Sites.Methods Mol Biol2020
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
25678556Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.Science2015
24676093Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing.Genome Res2014
24927836Detecting expressed genes using CAGE.Methods Mol Biol2014
24670764A promoter-level mammalian expression atlas.Nature2014
20967606Deep cap analysis of gene expression.Methods Mol Biol2011
21575607miRNA profiling of bilateral rat hippocampal CA3 by deep sequencing.Biochem Biophys Res Commun2011
19074369Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.Genome Res2009
19377478Tiny RNAs associated with transcription start sites in animals.Nat Genet2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
18267119Ancient divergence of animal protein tyrosine kinase genes demonstrated by a gene family tree including choanoflagellate genes.FEBS Lett2008
18611171Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.Biotechniques2008
16489339CAGE: cap analysis of gene expression.Nat Methods2006
  • 1 - 20 of 20

Recommended Authors

Sascha H Duttke
College of Veterinary Medicine, Washington State University
Career Start Year 2012
Number of shared co-authors 0
Alexandre Fort
RIKEN Center for Life Science Technologies
Career Start Year 2010
Number of shared co-authors 69
Anton Kratz
University of California San Diego san francisco
Career Start Year 2008
Number of shared co-authors 25
Brian J Parker
New York University.
Career Start Year 2007
Number of shared co-authors 8
Tim R Mercer
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
Career Start Year 2007
Number of shared co-authors 7
Matthew E Ritchie
The University of Melbourne
Career Start Year 2006
Number of shared co-authors 5
Markus Hafner
National Institute of Arthritis and Musculoskeletal and Skin Diseases
Career Start Year 2006
Number of shared co-authors 0
Thanasis Margaritis
Princess Maxima Center for Pediatric Oncology
Career Start Year 2006
Number of shared co-authors 4
Igor Ulitsky
Weizmann Institute of Science
Career Start Year 2006
Number of shared co-authors 8
Yongjun Zhao
Canada British Columbia Cancer Research Centre, University of British Columbia
Career Start Year 2005
Number of shared co-authors 6
Eric L Van Nostrand
University of California
Career Start Year 2005
Number of shared co-authors 3
David L Corcoran
The University of North Carolina at Chapel Hill
Career Start Year 2005
Number of shared co-authors 0
Gene W Yeo
University of California
Career Start Year 2004
Number of shared co-authors 3
P??l S??trom
Norwegian University of Science and Technology (NTNU)
Career Start Year 2004
Number of shared co-authors 60
Mattia Pelizzola
Center for Genomic Science of , Istituto Italiano di Tecnologia (IIT)
Career Start Year 2004
Number of shared co-authors 1
Loyal A Goff
Johns Hopkins University School of Medicine
Career Start Year 2004
Number of shared co-authors 1
Xijin Ge
South Dakota State University
Career Start Year 2002
Number of shared co-authors 2
Shujun Luo
Predicine Inc.
Career Start Year 2000
Number of shared co-authors 1
Marcel E Dinger
The University of Sydney
Career Start Year 2000
Number of shared co-authors 14
Gregory R Grant
Perelman School of Medicine, University of Pennsylvania Philadelphia
Career Start Year 1999
Number of shared co-authors 1
Ramana V Davuluri
The Wistar Institute
Career Start Year 1999
Number of shared co-authors 0
Uwe Ohler
Humboldt University
Career Start Year 1999
Number of shared co-authors 7
Mark D Robinson
University of Zurich
Career Start Year 1997
Number of shared co-authors 0
Jiayu Wen
Beijing University of Chinese Medicine
Career Start Year 1997
Number of shared co-authors 10
Jonathan Schug
University of Pennsylvania Perelman School of Medicine
Career Start Year 1997
Number of shared co-authors 0
Vishwanath R Iyer
Indian Institute of Technology Bombay
Career Start Year 1995
Number of shared co-authors 12
Danos C Christodoulou
University of Patras
Career Start Year 1995
Number of shared co-authors 0
Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Career Start Year 1992
Number of shared co-authors 3
Wing Hung Wong
Stanford University
Career Start Year 1991
Number of shared co-authors 0
Aviv Regev
Broad Institute of MIT and Harvard
Career Start Year 1987
Number of shared co-authors 13

Collaborators

Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 15
Mitsuyoshi Murata
Center for Integrative Medical Sciences
Co-authored papers 14
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 13
Miki Kojima
Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology
Co-authored papers 11
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 11
Michihira Tagami
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 8
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 7
Shiro Fukuda
Graduate School of Medicine, Osaka University
Co-authored papers 7
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 6
Shohei Noma
Center for Integrative Medical Sciences
Co-authored papers 6
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 6
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 6
Akira Hasegawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Takahiro Arakawa
Tokyo University of Technology
Co-authored papers 5
Valerio Orlando
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 5
Christine A Wells
The University of Melbourne
Co-authored papers 5
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 5
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Geoffrey J Faulkner
Mater Research Institute - University of Queensland
Co-authored papers 5
Marina Lizio
Cerevance Ltd
Co-authored papers 5
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 5
Noriko Ninomiya
Japan Tobacco Inc.
Co-authored papers 4
Yuri Ishizu
RIKEN Center for Life Science Technologies
Co-authored papers 4
Yasushi Okazaki
Intractable Disease Research Center, Graduate School of Medicine, Juntendo University
Co-authored papers 4
Andreas Lennartsson
Karolinska Institute
Co-authored papers 4
Sayaka Nagao-Sato
Ochanomizu University
Co-authored papers 4
Release 1.2