Author details

Full Name

Andrea Tanzer

Affiliation

ORCID

Career Start Year

1997

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35994477	A toolbox for class I HDACs reveals isoform specific roles in gene regulation and protein acetylation.	PLoS Genet	2022
33538792	RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes.		2021
30760640	Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs.	Plant Physiol	2019
30385321	RNA modifications in structure prediction - Status quo and future challenges.	Methods	2019
30071678	RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates.	Genes	2018
28074834	Corrigendum: Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.	Sci Rep	2017
27713552	Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells.	Sci Rep	2016
27064083	Predicting RNA secondary structures from sequence and probing data.	Methods	2016
27178967	Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammationÂ resolution.	Molecular Systems Biology	2016
26602692	AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements.	Nucleic Acids Research	2016
27531712	Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq).	Nat Commun	2016
27782844	Transcriptome-wide effects of inverted SINEs on gene expression and their impact on RNA polymerase II activity.		2016
25582907	Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.	Nat Commun	2015
25164755	Comparative analysis of the transcriptome across distant species.	Nature	2014
25409824	A comparative encyclopedia of DNA elements in the mouse genome.	Nature	2014
24512684	A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection.		2014
24334379	2D meets 4G: G-quadruplexes in RNA secondary structure prediction.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2013
22951037	The GENCODE pseudogene resource.	Genome Biol	2012
22955988	The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.	Genome Res	2012
22955987	GENCODE: the reference human genome annotation for The ENCODE Project.	Genome Res	2012
22955982	Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome.	Genome Res	2012
22955620	Landscape of transcription in human cells.	Nature	2012
21955586	Animal snoRNAs and scaRNAs with exceptional structures.	RNA Biology	2011
20150415	RNPomics: defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles.	Nucleic Acids Research	2010
20349053	Nematode sbRNAs: homologs of vertebrate Y RNAs.	Journal of Molecular Evolution	2010
20037582	Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library.	Nat Biotechnol	2010
19151082	Non-coding RNA annotation of the genome of Trichoplax adhaerens.	Nucleic Acids Research	2009
18440024	Folding kinetics of large RNAs.	Journal of Molecular Biology	2008
18809929	Adaptive changes in the transcription factor HoxA-11 are essential for the evolution of pregnancy in mammals.	Proceedings of the National Academy of Sciences of the United States of America	2008
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17568003	Structured RNAs in the ENCODE selected regions of the human genome.	Genome Res	2007
17171697	RNAs everywhere: genome-wide annotation of structured RNAs.	Journal of Experimental Zoology Part B: Molecular and Developmental Evolution	2007
17901297	Paired-end mapping reveals extensive structural variation in the human genome.	Science	2007
16480513	The expansion of the metazoan microRNA repertoire.	BMC Genomics	2006
16957387	Evolution of microRNAs.	Methods in Molecular Biology	2006
18202870	Evolutionary patterns of non-coding RNAs.	Theory in Biosciences	2005
15643628	Evolution of microRNAs located within Hox gene clusters.	Journal of Experimental Zoology Part B: Molecular and Developmental Evolution	2005
15723697	Comparative promoter region analysis powered by CORG.	BMC Genomics	2005
15136036	Molecular evolution of a microRNA cluster.	Journal of Molecular Biology	2004
9176559	The effect of paclitaxel on the radiosensitivity of gynecological tumor cells.	Strahlentherapie und Onkologie	1997