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Author Details

Mark D Robinson
University of Zurich
1997
139
58
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37645841DifferentialRegulation: a Bayesian hierarchical approach to identify differentially regulated genes.bioRxiv2024
36765378SampleQC: robust multivariate, multi-cell type, multi-sample quality control for single-cell data.Genome Biol2023
37853362Validation of hypermethylated DNA regions found in colorectal cancers as potential aging-independent biomarkers of precancerous colorectal lesions.BMC Cancer2023
37935663RNA recognition by Npl3p reveals U2 snRNA-binding compatible with a chaperone role during splicing.Nat Commun2023
36991470The shaky foundations of simulating single-cell RNA sequencing data.Genome Biol2023
37142439Gapless provides combined scaffolding, gap filling, and assembly correction with long reads.Life Sci Alliance2023
37202489Conserved stromal-immune cell circuits secure B cell homeostasis and function.Nat Immunol2023
37198712Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability.Genome Biol2023
37095564Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data.Genome Biol2023
34369258Disentangling tumorigenesis-associated DNA methylation changes in colorectal tissues from those associated with ageing.Epigenetics2022
35346028Correction to: A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells.BMC Genomics2022
35573685An Optimized Tissue Dissociation Protocol for Single-Cell RNA Sequencing Analysis of Fresh and Cultured Human Skin Biopsies.Front Cell Dev Biol2022
35354817Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma.Nat Commun2022
36137652Complement downregulation promotes an inflammatory signature that renders colorectal cancer susceptible to immunotherapy.J Immunother Cancer2022
35228263Phase I Trial Characterizing the Pharmacokinetic Profile of N-803, a Chimeric IL-15 Superagonist, in Healthy Volunteers.J Immunol2022
33300035MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome.Nucleic Acids Res2021
33758076CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data.Life Sci Alliance2021
33608040ReSeq simulates realistic Illumina high-throughput sequencing data.Genome Biol2021
34711176A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells.BMC Genomics2021
34021139Synaptic FUS accumulation triggers early misregulation of synaptic RNAs in a mouse model of ALS.Nat Commun2021
34273949ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw.BMC Genomics2021
34001188treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses.Genome Biol2021
33971812Censcyt: censored covariates in differential abundance analysis in cytometry.BMC Bioinformatics2021
32252665The DNA hypermethylation phenotype of colorectal cancer liver metastases resembles that of the primary colorectal cancers.BMC Cancer2020
32033589Eleven grand challenges in single-cell data science.Genome Biol2020
31957112Circulating neutrophil subsets in advanced lung cancer patients exhibit unique immune signature and relate to prognosis.FASEB J2020
33257685muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data.Nat Commun2020
33339496Targeting the autosomal Ceratitis capitata transformer gene using Cas9 or dCas9 to masculinize XX individuals without inducing mutations.BMC Genet2020
32873325pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools.Genome Biol2020
32178699BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty.Genome Biol2020
32487212DAMEfinder: a method to detect differential allele-specific methylation.Epigenetics Chromatin2020
32453623Shedding Light on the Transcriptomic Dark Matter in Biological Psychiatry: Role of Long Noncoding RNAs in D-cycloserine-Induced Fear Extinction in Posttraumatic Stress Disorder.OMICS2020
30425074TCF/LEF dependent and independent transcriptional regulation of Wnt/β-catenin target genes.EMBO J2019
31353404Mammalian Annotation Database for improved annotation and functional classification of Omics datasets from less well-annotated organisms.Database (Oxford)2019
31467189<i>Maleness-on-the-Y</i> (<i>MoY</i>) orchestrates male sex determination in major agricultural fruit fly pests.Science2019
31178352Pro-inflammatory Aorta-Associated Macrophages Are Involved in Embryonic Development of Hematopoietic Stem Cells.Immunity2019
31597556Benchmarking comes of age.Genome Biol2019
31541082TNFR2 induced priming of the inflammasome leads to a RIPK1-dependent cell death in the absence of XIAP.Cell Death Dis2019
31366910A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes.Nat Commun2019
31221659Active receptor tyrosine kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish.Dis Model Mech2019
31221194Essential guidelines for computational method benchmarking.Genome Biol2019
30988302Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp.Nat Commun2019
31098416diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering.Commun Biol2019
31145756CD8+ T cells retain protective functions despite sustained inhibitory receptor expression during Epstein-Barr virus infection in vivo.PLoS Pathog2019
31088905ARMOR: An Automated Reproducible MOdular Workflow for Preprocessing and Differential Analysis of RNA-seq Data.G3 (Bethesda)2019
30913300Abscisic acid is a substrate of the ABC transporter encoded by the durable wheat disease resistance gene Lr34.New Phytol2019
30962276The Spinal Transcriptome after Cortical Stroke: In Search of Molecular Factors Regulating Spontaneous Recovery in the Spinal Cord.J Neurosci2019
30655364A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs.Life Sci Alliance2019
29028961Towards unified quality verification of synthetic count data with countsimQC.Bioinformatics2018
30081835Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression.BMC Genomics2018
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Collaborators

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Johns Hopkins Bloomberg School of Public Health
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York University
Co-authored papers 5
Sloan Kettering Institute
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Co-authored papers 5
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Co-authored papers 4
University of Toronto
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Max Planck Institute for Evolutionary Anthropology
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University of California San Francisco
Co-authored papers 4
West China Second University Hospital, Sichuan University
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Co-authored papers 3
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Co-authored papers 3
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Institute of Health Policy Management and Evaluation, University of Toronto
Co-authored papers 3
Conway Institute of Biomedical and Biomolecular Sciences, University College Dublin
Co-authored papers 3
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University Hospital Zurich
Co-authored papers 3
Hospital for Sick Children
Co-authored papers 3
Boston University School of Medicine, Boston University
Co-authored papers 3
University of Toronto
Co-authored papers 3
University of Toronto
Co-authored papers 3
Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital
Co-authored papers 3
MS Research Unit
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University Hospital of Wales
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University Hospital Zurich
Co-authored papers 2