Author details

Full Name

James Malone

Affiliation

European Bioinformatics Institute (EMBL-EBI)

ORCID

Career Start Year

2009

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35616100	A Simple Standard for Sharing Ontological Mappings (SSSOM).	Database (Oxford)	2022
35616100	A Simple Standard for Sharing Ontological Mappings (SSSOM).	Database (Oxford)	2022
29347969	MIRO: guidelines for minimum information for the reporting of an ontology.	J Biomed Semantics	2018
29347969	MIRO: guidelines for minimum information for the reporting of an ontology.	J Biomed Semantics	2018
27899665	Open Targets: a platform for therapeutic target identification and validation.	Nucleic Acids Res	2017
28662064	Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.	PLoS Biol	2017
29197409	Matching disease and phenotype ontologies in the ontology alignment evaluation initiative.	J Biomed Semantics	2017
27899665	Open Targets: a platform for therapeutic target identification and validation.	Nucleic Acids Res	2017
29197409	Matching disease and phenotype ontologies in the ontology alignment evaluation initiative.	J Biomed Semantics	2017
28662064	Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.	PLoS Biol	2017
26867217	Ten Simple Rules for Selecting a Bio-ontology.	PLoS Comput Biol	2016
27195102	The cellular microscopy phenotype ontology.	J Biomed Semantics	2016
27011785	Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.	J Biomed Semantics	2016
26867217	Ten Simple Rules for Selecting a Bio-ontology.	PLoS Comput Biol	2016
27128319	The Ontology for Biomedical Investigations.	PLoS One	2016
27042287	Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates.	J Biomed Semantics	2016
27602295	The health care and life sciences community profile for dataset descriptions.	PeerJ	2016
27602295	The health care and life sciences community profile for dataset descriptions.	PeerJ	2016
27195102	The cellular microscopy phenotype ontology.	J Biomed Semantics	2016
27128319	The Ontology for Biomedical Investigations.	PLoS One	2016
27042287	Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates.	J Biomed Semantics	2016
27011785	Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.	J Biomed Semantics	2016
25348409	Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.	Nucleic Acids Res	2015
25348409	Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.	Nucleic Acids Res	2015
24413672	The EBI RDF platform: linked open data for the life sciences.	Bioinformatics	2014
25852852	CLO: The cell line ontology.	J Biomed Semantics	2014
24304889	Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.	Nucleic Acids Res	2014
24413672	The EBI RDF platform: linked open data for the life sciences.	Bioinformatics	2014
25068035	The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.	J Biomed Semantics	2014
25852852	CLO: The cell line ontology.	J Biomed Semantics	2014
25068035	The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.	J Biomed Semantics	2014
24304889	Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.	Nucleic Acids Res	2014
22554701	Measuring the level of activity in community built bio-ontologies.	J Biomed Inform	2013
22554701	Measuring the level of activity in community built bio-ontologies.	J Biomed Inform	2013
23193272	ArrayExpress update--trends in database growth and links to data analysis tools.	Nucleic Acids Res	2013
23479348	EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.	Bioinformatics	2013
23479348	EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.	Bioinformatics	2013
23193272	ArrayExpress update--trends in database growth and links to data analysis tools.	Nucleic Acids Res	2013
22064864	Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments.	Nucleic Acids Res	2012
22449719	Translating standards into practice - one Semantic Web API for Gene Expression.	J Biomed Inform	2012
22064864	Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments.	Nucleic Acids Res	2012
22449719	Translating standards into practice - one Semantic Web API for Gene Expression.	J Biomed Inform	2012
21231919	Contributions of the EMERALD project to assessing and improving microarray data quality.	Biotechniques	2011
21071405	ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments.	Nucleic Acids Res	2011
21231919	Contributions of the EMERALD project to assessing and improving microarray data quality.	Biotechniques	2011
21624160	Automating generation of textual class definitions from OWL to English.	J Biomed Semantics	2011
21995944	Anatomy ontologies and potential users: bridging the gap.	J Biomed Semantics	2011
21995944	Anatomy ontologies and potential users: bridging the gap.	J Biomed Semantics	2011
21624160	Automating generation of textual class definitions from OWL to English.	J Biomed Semantics	2011
21071405	ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments.	Nucleic Acids Res	2011

1 - 50 of 60

Dustin Olley

University of Maryland School of Medicine, Institute for Genome Sciences

Career Start Year 2019

Number of shared co-authors 7

Mark Thompson

Leiden University Medical Center

Career Start Year 2014

Number of shared co-authors 23

Tudor Groza

Perth Children's Hospital

Career Start Year 2012

Number of shared co-authors 45

Frederic B Bastian

University of Lausanne

Career Start Year 2010

Number of shared co-authors 9

Aravind Venkatesan

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2010

Number of shared co-authors 6

Prashanti Manda

University of North Carolina at Greensboro

Career Start Year 2009

Number of shared co-authors 5

Seth Carbon

Lawrence Berkeley National Laboratory

Career Start Year 2009

Number of shared co-authors 44

Csongor Nyulas

Stanford University

Career Start Year 2008

Number of shared co-authors 5

Christopher J O Baker

University of New Brunswick

Career Start Year 2007

Number of shared co-authors 11

Robert Hoehndorf

King Abdullah University of Science and Technology

Career Start Year 2006

Number of shared co-authors 31

Jesualdo Tom??s Fern??ndez-Breis

Universidad de Murcia

Career Start Year 2004

Number of shared co-authors 13

Erick Antezana

Norwegian University of Science and Technology

Career Start Year 2004

Number of shared co-authors 20

Steven Vercruysse

Norwegian University of Science and Technology (NTNU)

Career Start Year 2004

Number of shared co-authors 5

Rebecca E Foulger

Queen Mary University of London

Career Start Year 2003

Number of shared co-authors 11

Benjamin M Good

Lawrence Berkeley National Laboratory

Career Start Year 2003

Number of shared co-authors 16

Dietrich Rebholz-Schuhmann

University of Cologne

Career Start Year 2003

Number of shared co-authors 15

Timothy Clark (CM4AI)

University of Virginia

Career Start Year 2003

Number of shared co-authors 34

Jane Lomax

Wellcome Sanger Institute

Career Start Year 2003

Number of shared co-authors 23

Andrew I Su

The Scripps Research Institute

Career Start Year 2001

Number of shared co-authors 15

Georgios V Gkoutos

Institute of Cancer and Genomic Sciences, University of Birmingham

Career Start Year 2000

Number of shared co-authors 24

Michael Bada

Center for Health AI, University of Colorado Anschutz Medical Campus

Career Start Year 2000

Number of shared co-authors 12

Karen Eilbeck

University of Utah

Career Start Year 1999

Number of shared co-authors 31

Marco Roos

Leiden University Medical Center

Career Start Year 1999

Number of shared co-authors 28

Andra Waagmeester

Maastricht University

Career Start Year 1998

Number of shared co-authors 19

Midori A Harris

University of Cambridge

Career Start Year 1998

Number of shared co-authors 16

Yasunori Yamamoto

Database Center for Life Science, Joint Support-Center for Data Science Research

Career Start Year 1997

Number of shared co-authors 27

Suzanna E Lewis

Lawrence Berkeley National Laboratory

Career Start Year 1996

Number of shared co-authors 65

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Career Start Year 1993

Number of shared co-authors 28

Lawrence E Hunter

University of Colorado School of Medicine

Career Start Year 1993

Number of shared co-authors 5

Kei-Hoi Cheung

Yale University School of Medicine

Career Start Year 1992

Number of shared co-authors 15

row(s) 1 - 30 of 30

Helen Parkinson

European Bioinformatics Institute

Co-authored papers 22

Tony Burdett

European Bioinformatics Institute

Co-authored papers 10

Simon Jupp

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 9

Eleanor Williams

University of Dundee

Co-authored papers 8

Alvis Brazma

European Bioinformatics Institute

Co-authored papers 8

Gabriella Rustici

University of Cambridge

Co-authored papers 7

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 6

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 5

Robert Stevens

The University of Manchester

Co-authored papers 5

Melissa A Haendel

Co-authored papers 5

Philippe Rocca-Serra

University of Oxford

Co-authored papers 5

Susanna-Assunta Sansone

Oxford e-Research Centre, University of Oxford

Co-authored papers 4