Author details

Full Name

Adam A Margolin

Affiliation

Icahn School of Medicine

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36824803	An open protocol for modeling T Cell Clonotype repertoires using TCRÎ² CDR3 sequences.	Res Sq	2023
36824803	An open protocol for modeling T Cell Clonotype repertoires using TCRÎ² CDR3 sequences.	Res Sq	2023
37365517	An open protocol for modeling T Cell Clonotype repertoires using TCRÎ² CDR3 sequences.	BMC Genomics	2023
37365517	An open protocol for modeling T Cell Clonotype repertoires using TCRÎ² CDR3 sequences.	BMC Genomics	2023
33051644	svpluscnv: analysis and visualization of complex structural variation data.	Bioinformatics	2021
33051644	svpluscnv: analysis and visualization of complex structural variation data.	Bioinformatics	2021
32246132	A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.	Nat Genet	2020
32246132	A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.	Nat Genet	2020
30559381	Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.	Nature	2019
30559381	Addendum: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.	Nature	2019
29653567	Population-level distribution and putative immunogenicity of cancer neoepitopes.	BMC Cancer	2018
30400818	Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection.	Genome Biol	2018
30300579	Complement C5a Fosters Squamous Carcinogenesis and Limits T Cell Response to Chemotherapy.	Cancer Cell	2018
30253747	Valection: design optimization for validation and verification studies.	BMC Bioinformatics	2018
30283195	SHIFT: speedy histopathological-to-immunofluorescent translation of whole slide images using conditional generative adversarial networks.	Proc SPIE Int Soc Opt Eng	2018
29385983	Germline contamination and leakage in whole genome somatic single nucleotide variant detection.	BMC Bioinformatics	2018
29653567	Population-level distribution and putative immunogenicity of cancer neoepitopes.	BMC Cancer	2018
29599409	Functional Precision Medicine Identifies Novel Druggable Targets and Therapeutic Options in Head and Neck Cancer.	Clin Cancer Res	2018
29735700	Pan-cancer transcriptional signatures predictive of oncogenic mutations reveal that Fbw7 regulates cancer cell oxidative metabolism.	Proc Natl Acad Sci U S A	2018
30253747	Valection: design optimization for validation and verification studies.	BMC Bioinformatics	2018
30400818	Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection.	Genome Biol	2018
30283195	SHIFT: speedy histopathological-to-immunofluorescent translation of whole slide images using conditional generative adversarial networks.	Proc SPIE Int Soc Opt Eng	2018
30300579	Complement C5a Fosters Squamous Carcinogenesis and Limits T Cell Response to Chemotherapy.	Cancer Cell	2018
29385983	Germline contamination and leakage in whole genome somatic single nucleotide variant detection.	BMC Bioinformatics	2018
29599409	Functional Precision Medicine Identifies Novel Druggable Targets and Therapeutic Options in Head and Neck Cancer.	Clin Cancer Res	2018
29735700	Pan-cancer transcriptional signatures predictive of oncogenic mutations reveal that Fbw7 regulates cancer cell oxidative metabolism.	Proc Natl Acad Sci U S A	2018
28813672	Chromatin and Transcriptional Analysis of Mesoderm Progenitor Cells Identifies HOPX as a Regulator of Primitive Hematopoiesis.	Cell Rep	2017
28988802	A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines.	Cell Syst	2017
28813672	Chromatin and Transcriptional Analysis of Mesoderm Progenitor Cells Identifies HOPX as a Regulator of Primitive Hematopoiesis.	Cell Rep	2017
28380359	Quantitative Multiplex Immunohistochemistry Reveals Myeloid-Inflamed Tumor-Immune Complexity Associated with Poor Prognosis.	Cell Rep	2017
29060785	Multiplexed immunohistochemistry image analysis using sparse coding.	Annu Int Conf IEEE Eng Med Biol Soc	2017
29059962	Deep learning based Nucleus Classification in pancreas histological images.	Annu Int Conf IEEE Eng Med Biol Soc	2017
30364881	BREAST CANCER HISTOPATHOLOGY IMAGE ANALYSIS PIPELINE FOR TUMOR PURITY ESTIMATION.	Proc IEEE Int Symp Biomed Imaging	2017
30364826	Integrative Analysis on Histopathological Image for Identifying Cellular Heterogeneity.	Proc SPIE Int Soc Opt Eng	2017
28138153	CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.	Nat Genet	2017
28082455	Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies.	Bioinformatics	2017
30364881	BREAST CANCER HISTOPATHOLOGY IMAGE ANALYSIS PIPELINE FOR TUMOR PURITY ESTIMATION.	Proc IEEE Int Symp Biomed Imaging	2017
30364826	Integrative Analysis on Histopathological Image for Identifying Cellular Heterogeneity.	Proc SPIE Int Soc Opt Eng	2017
28138153	CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.	Nat Genet	2017
28082455	Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies.	Bioinformatics	2017
28380359	Quantitative Multiplex Immunohistochemistry Reveals Myeloid-Inflamed Tumor-Immune Complexity Associated with Poor Prognosis.	Cell Rep	2017
29060785	Multiplexed immunohistochemistry image analysis using sparse coding.	Annu Int Conf IEEE Eng Med Biol Soc	2017
29059962	Deep learning based Nucleus Classification in pancreas histological images.	Annu Int Conf IEEE Eng Med Biol Soc	2017
28988802	A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines.	Cell Syst	2017
27293150	Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium.	Stem Cell Reports	2016
28324942	Quantitative analysis of histological tissue image based on cytological profiles and spatial statistics.	Annu Int Conf IEEE Eng Med Biol Soc	2016
27293150	Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium.	Stem Cell Reports	2016
28324942	Quantitative analysis of histological tissue image based on cytological profiles and spatial statistics.	Annu Int Conf IEEE Eng Med Biol Soc	2016
25592566	Stepwise group sparse regression (SGSR): gene-set-based pharmacogenomic predictive models with stepwise selection of functional priors.	Pac Symp Biocomput	2015
25592566	Stepwise group sparse regression (SGSR): gene-set-based pharmacogenomic predictive models with stepwise selection of functional priors.	Pac Symp Biocomput	2015

1 - 50 of 124

Mehmet Eren Ahsen

Gies College of Business, University of Illinois at Urbana-Champaign.

Career Start Year 2015

Number of shared co-authors 20

David L Gibbs

Institute for Systems Biology

Career Start Year 2013

Number of shared co-authors 16

Elana J Fertig

Johns Hopkins University School of Medicine

Career Start Year 2010

Number of shared co-authors 22

Stephen R Piccolo

Brigham Young University

Career Start Year 2008

Number of shared co-authors 16

Kahn Rhrissorrakrai

T.J. Watson Research Center

Career Start Year 2008

Number of shared co-authors 9

Siyuan Zheng

Greehey Children's Cancer Research Institute

Career Start Year 2007

Number of shared co-authors 43

James C Costello

University of Colorado Anschutz Medical Campus

Career Start Year 2006

Number of shared co-authors 27

Jeroen de Ridder

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2006

Number of shared co-authors 4

Theo A Knijnenburg

Allen Institute for Cell Science

Career Start Year 2006

Number of shared co-authors 27

Matti Nykter

Prostate Cancer Research Center, Tampere University and Tays Cancer Center

Career Start Year 2006

Number of shared co-authors 6

Chao Cheng

Baylor College of Medicine

Career Start Year 2005

Number of shared co-authors 6

Gabriela Alexe

Dana-Farber Cancer Institute

Career Start Year 2004

Number of shared co-authors 28

Benjamin Haibe-Kains

Princess Margaret Cancer Centre, University Health Network

Career Start Year 2004

Number of shared co-authors 12

Florian Markowetz

CRUK Cambridge Institute, University of Cambridge

Career Start Year 2003

Number of shared co-authors 8

Joel S Parker

Lineberger Cancer Center, University of North Carolina

Career Start Year 2002

Number of shared co-authors 37

Yidong Chen

The University of Texas Health Science Center at San Antonio

Career Start Year 2001

Number of shared co-authors 7

Mark A van de Wiel

Amsterdam University Medical Centers (Amsterdam UMC)

Career Start Year 2001

Number of shared co-authors 2

Dana Pe'er

Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center

Career Start Year 2000

Number of shared co-authors 10

Lodewyk F A Wessels

University Medical Centre Mannheim, University of Heidelberg

Career Start Year 2000

Number of shared co-authors 19

Celine Lefebvre

The Scripps Research Institute

Career Start Year 1999

Number of shared co-authors 11

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 10

Benedikt Brors

German Cancer Research Center (DKFZ)

Career Start Year 1997

Number of shared co-authors 13

Wolfgang Huber

Technische Universitat Munchen

Career Start Year 1995

Number of shared co-authors 10

Dimitris Anastassiou

Columbia University

Career Start Year 1995

Number of shared co-authors 9

Adam B Olshen

12224University of California san francisco

Career Start Year 1993

Number of shared co-authors 15

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 3

Luigi Marchionni

Weill-Cornell School of Medicine

Career Start Year 1989

Number of shared co-authors 7

Michael F Ochs

The College of New Jersey

Career Start Year 1988

Number of shared co-authors 1

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 5

Rainer Spang

University of Regensburg

Career Start Year 1969

Number of shared co-authors 3

row(s) 1 - 30 of 30

Andrea Califano

Columbia University

Co-authored papers 12

Joshua M Stuart

University of California at Santa Cruz

Co-authored papers 11

Gustavo Stolovitzky

IBM T.J. Watson Research Center

Co-authored papers 10

Stephen H Friend

University of Oxford

Co-authored papers 9

Kyle Ellrott

Oregon Health & Science University

Co-authored papers 9

Justin Guinney

University of Washington

Co-authored papers 7

Joe W Gray

Oregon Health and Science University

Co-authored papers 7

In Sock Jang

Celgene Corporation

Co-authored papers 7

Thea Norman

Bill & Melinda Gates Foundation

Co-authored papers 6

Paul C Boutros

University of California los angeles

Co-authored papers 6

Barbara L Weber

Basser Center for BRCA, Abramson Cancer Center, University of Pennsylvania

Co-authored papers 5

Todd R Golub

Broad Institute of MIT and Harvard

Co-authored papers 5

Michael R Kellen

University of Washington

Co-authored papers 5

James Christopher Bare

Institute for Systems Biology

Co-authored papers 5

Takafumi N Yamaguchi

University of California los angeles

Co-authored papers 4

Kai Wang

Pfizer Inc.

Co-authored papers 4

Larsson Omberg

Cornell University

Co-authored papers 4

Riccardo Dalla-Favera

Institute for Cancer Genetics, Columbia University

Co-authored papers 4

Mehmet G??nen

Department of Infectious Diseases and Clinical Microbiology, Koc University

Co-authored papers 4

Adam D Ewing

Mater Research Institute - University of Queensland

Co-authored papers 4

Wei Keat Lim

Regeneron Pharmaceuticals

Co-authored papers 4

Katia Basso

Institute for Cancer Genetics, Columbia University

Co-authored papers 4

Kathleen E Houlahan

University of California los angeles

Co-authored papers 4

Cristian Caloian

Ontario Institute for Cancer Research

Co-authored papers 4

Levi A Garraway

Broad Institute of Harvard and MIT

Co-authored papers 4

Jill P Mesirov

University of California San Diego

Co-authored papers 3

Yuliang Wang

Nanjing Medical University

Co-authored papers 3

Gad Getz

Broad Institute of the Massachusetts Institute of Technology and Harvard

Co-authored papers 3

Mariano J Alvarez

Vagelos College of Physicians and Surgeons, Columbia University Irving Medical Center

Co-authored papers 3

Nicolas Stransky

Co-authored papers 3

1 - 30

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