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Author Details

Elodie Ghedin
National Institute of Allergy and Infectious Diseases, National Institutes of Health
1996
195
58
PMIDPaper TitleJournal TitlePublished Year
36200701Clinical, Virologic, and Immunologic Evaluation of Symptomatic Coronavirus Disease 2019 Rebound Following Nirmatrelvir/Ritonavir Treatment.Clin Infect Dis2023
37838705Miniature spatial transcriptomics for studying parasite-endosymbiont relationships at the micro scale.Nat Commun2023
37503024Host obesity impacts genetic variation in influenza A viral populations.bioRxiv2023
37677136Lower Airway Dysbiosis Augments Lung Inflammatory Injury in Mild-to-Moderate Chronic Obstructive Pulmonary Disease.Am J Respir Crit Care Med2023
37811984<i>Wolbachia</i> interferes with Zika virus replication by hijacking cholesterol metabolism in mosquito cells.Microbiol Spectr2023
37255439Influenza Defective Interfering Virus Promotes Multiciliated Cell Differentiation and Reduces the Inflammatory Response in Mice.J Virol2023
37054986US National Institutes of Health Prioritization of SARS-CoV-2 Variants.Emerg Infect Dis2023
37276885Oral Microbiota and Pediatric Asthma Phenotype: A New Window for Biomarkers?Am J Respir Crit Care Med2023
37207002Tracking the emergence of antigenic variants in influenza A virus epidemics in Brazil.Virus Evol2023
37330554CRISPR arrays as high-resolution markers to track microbial transmission during influenza infection.Microbiome2023
36857394Influenza A virus reassortment is strain dependent.PLoS Pathog2023
36695611Successful lung transplantation using an allograft from a COVID-19-recovered donor: a potential role for subgenomic RNA to guide organ utilization.Am J Transplant2023
36728413Bordetella bronchiseptica-Mediated Interference Prevents Influenza A Virus Replication in the Murine Nasal Cavity.Microbiol Spectr2023
34757841Structurally Conserved Domains between Flavivirus and Alphavirus Fusion Glycoproteins Contribute to Replication and Infectious-Virion Production.J Virol2022
35479404Sex disparities in influenza: A multiscale network analysis.iScience2022
35734093COVID-19 redux: clinical, virologic, and immunologic evaluation of clinical rebound after nirmatrelvir/ritonavir.medRxiv2022
35794385100-year-old pandemic flu viruses yield new genomes.Nature2022
35637337An early warning system for emerging SARS-CoV-2 variants.Nat Med2022
35514207Evaluation of determinants of the serological response to the quadrivalent split-inactivated influenza vaccine.Mol Syst Biol2022
36533601Metagenomic sequencing of the bronchoalveolar lavage extracellular virome and cellular transcriptome of sarcoidosis patients does not detect rubella virus.Sarcoidosis Vasc Diffuse Lung Dis2022
36366544Vaccination History, Body Mass Index, Age, and Baseline Gene Expression Predict Influenza Vaccination Outcomes.Viruses2022
36032964Within-host genetic diversity of SARS-CoV-2 in the context of large-scale hospital-associated genomic surveillance.medRxiv2022
36300929Sequential Transmission of Influenza Viruses in Ferrets Does Not Enhance Infectivity and Does Not Predict Transmissibility in Humans.mBio2022
36197970Common and species-specific molecular signatures, networks, and regulators of influenza virus infection in mice, ferrets, and humans.Sci Adv2022
34940844Yearlong COVID-19 Infection Reveals Within-Host Evolution of SARS-CoV-2 in a Patient With B-Cell Depletion.J Infect Dis2022
33446604Functional lower airways genomic profiling of the microbiome to capture active microbial metabolism.Eur Respir J2021
33655261Microbial signatures in the lower airways of mechanically ventilated COVID19 patients associated with poor clinical outcome.medRxiv2021
33791687Microbial signatures in the lower airways of mechanically ventilated COVID19 patients associated with poor clinical outcome.Res Sq2021
33539725How Does Large-Scale Genomic Analysis Shape Our Understanding of COVID Variants in Real Time?Cell Syst2021
33582300New Proteomic Signatures to Distinguish Between Zika and Dengue Infections.Mol Cell Proteomics2021
34642697Year-long COVID-19 infection reveals within-host evolution of SARS-CoV-2 in a patient with B cell depletion.medRxiv2021
34465900Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome.Nat Microbiol2021
34198050Detection of SARS-CoV2 variants by Mesa Accula.J Clin Virol2021
32327641Sex chromosome evolution in parasitic nematodes of humans.Nat Commun2020
31937643Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection.mBio2020
31871239Quantifying between-Host Transmission in Influenza Virus Infections.Cold Spring Harb Perspect Med2020
31882450A rapid and label-free platform for virus capture and identification from clinical samples.Proc Natl Acad Sci U S A2020
33408879Mapping the evolutionary landscape of Zika virus infection in immunocompromised mice.Virus Evol2020
33284326iGenomics: Comprehensive DNA sequence analysis on your Smartphone.Gigascience2020
33046650Glycomic analysis of host response reveals high mannose as a key mediator of influenza severity.Proc Natl Acad Sci U S A2020
32718933A Meta-Analysis of <i>Wolbachia</i> Transcriptomics Reveals a Stage-Specific <i>Wolbachia</i> Transcriptional Response Shared Across Different Hosts.G3 (Bethesda)2020
32574217Prediction pipeline for discovery of regulatory motifs associated with Brugia malayi molting.PLoS Negl Trop Dis2020
32981324Age-Dependent Glycomic Response to the 2009 Pandemic H1N1 Influenza Virus and Its Association with Disease Severity.J Proteome Res2020
32866158CRISPR-mediated Transfection of Brugia malayi.PLoS Negl Trop Dis2020
32779567Modeling the metabolic interplay between a parasitic worm and its bacterial endosymbiont allows the identification of novel drug targets.Elife2020
32527783Nearly Complete Genome Sequence of Brugia malayi Strain FR3.Microbiol Resour Announc2020
32178738Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection.Microbiome2020
32546676Initial Mapping of the New York City Wastewater Virome.mSystems2020
30663023Taxonomy of the order Mononegavirales: second update 2018.Arch Virol2019
31413133Development and Characterization of a Reverse-Genetics System for Influenza D Virus.J Virol2019
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Collaborators

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Co-authored papers 6
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Icahn School of Medicine at Mount Sinai
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University of Pretoria
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Center for Computational Biology, Johns Hopkins School of Medicine
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university of california los angeles
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Icahn School of Medicine at Mount Sinai
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Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation
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Personal Genome Diagnostics Inc.
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