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Author Details

Castrense Savojardo
Department of Pharmacy and Biotechnology, University of Bologna
2009
63
17
PMIDPaper TitleJournal TitlePublished Year
38056648Routes of dispersion of antibiotic resistance genes from the poultry farm system.Sci Total Environ2024
37791887MultifacetedProtDB: a database of human proteins with multiple functions.Nucleic Acids Res2024
36366787Wood feeding and social living: Draft genome of the subterranean termite Reticulitermes lucifugus (Blattodea; Termitoidae).Insect Mol Biol2023
37540220CoCoNat: a novel method based on deep learning for coiled-coil prediction.Bioinformatics2023
37385080Finding functional motifs in protein sequences with deep learning and natural language models.Curr Opin Struct Biol2023
37234922Resources and tools for rare disease variant interpretation.Front Mol Biosci2023
37365936Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.Proteomics2023
37356906ISPRED-SEQ: Deep Neural Networks and Embeddings for Predicting Interaction Sites in Protein Sequences.J Mol Biol2023
35302294Cloning the barley nec3 disease lesion mimic mutant using complementation by sequencing.Plant Genome2022
35742853Molecular Effects of Mutations in Human Genetic Diseases.Int J Mol Sci2022
35507262Turning Failures into Applications: The Problem of Protein οοG Prediction.Methods Mol Biol2022
35662454SVMyr: A Web Server Detecting Co- and Post-translational Myristoylation in Proteins.J Mol Biol2022
36227117E-SNPs&GO: embedding of protein sequence and function improves the annotation of human pathogenic variants.Bioinformatics2022
36289281Mapping human disease-associated enzymes into Reactome allows characterization of disease groups and their interactions.Sci Rep2022
36188216Pathogenic variation types in human genes relate to diseases through Pfam and InterPro mapping.Front Mol Biosci2022
31885042On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation.Brief Bioinform2021
33490109Solvent Accessibility of Residues Undergoing Pathogenic Variations in Humans: From Protein Structures to Protein Sequences.Front Mol Biosci2021
33809039Huntingtin: A Protein with a Peculiar Solvent Accessible Surface.Int J Mol Sci2021
35008593A Glance into MTHFR Deficiency at a Molecular Level.Int J Mol Sci2021
34765094DeepREx-WS: A web server for characterising protein-solvent interaction starting from sequence.Comput Struct Biotechnol J2021
34671077Ancient DNA SNP-panel data suggests stability in bluefin tuna genetic diversity despite centuries of fluctuating catches in the eastern Atlantic and Mediterranean.Sci Rep2021
34748900Comparative genomics of tadpole shrimps (Crustacea, Branchiopoda, Notostraca): Dynamic genome evolution against the backdrop of morphological stasis.Genomics2021
33963861BENZ WS: the Bologna ENZyme Web Server for four-level EC number annotation.Nucleic Acids Res2021
34118055Computer-Aided Prediction of Protein Mitochondrial Localization.Methods Mol Biol2021
34026820Mapping OMIM Disease-Related Variations on Protein Domains Reveals an Association Among Variation Type, Pfam Models, and Disease Classes.Front Mol Biosci2021
33972021BetAware-Deep: An Accurate Web Server for Discrimination and Topology Prediction of Prokaryotic Transmembrane β-barrel Proteins.J Mol Biol2021
31218353DeepMito: accurate prediction of protein sub-mitochondrial localization using convolutional neural networks.Bioinformatics2020
32938368Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito.BMC Bioinformatics2020
32751059Highlighting Human Enzymes Active in Different Metabolic Pathways and Diseases: The Case Study of EC 1.2.3.1 and EC 2.3.1.9.Biomedicines2020
30288922Draft genomes and genomic divergence of two Lepidurus tadpole shrimp species (Crustacea, Branchiopoda, Notostraca).Mol Ecol Resour2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
31301157Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants.Hum Mutat2019
31301154Assessing predictions of the impact of variants on splicing in CAGI5.Hum Mutat2019
31184403Assessment of methods for predicting the effects of PTEN and TPMT protein variants.Hum Mutat2019
31241222Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer.Hum Mutat2019
31294896Assessment of blind predictions of the clinical significance of BRCA1 and BRCA2 variants.Hum Mutat2019
31209948Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge.Hum Mutat2019
31260570Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5.Hum Mutat2019
31342580Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016.Hum Mutat2019
31283071Assessing predictions on fitness effects of missense variants in calmodulin.Hum Mutat2019
31066146Are machine learning based methods suited to address complex biological problems? Lessons from CAGI-5 challenges.Hum Mutat2019
31140652Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.Hum Mutat2019
30934684Functional and Structural Features of Disease-Related Protein Variants.Int J Mol Sci2019
30496382On the biases in predictions of protein stability changes upon variations: the INPS test case.Bioinformatics2019
29280997DeepSig: deep learning improves signal peptide detection in proteins.Bioinformatics2018
29718411BUSCA: an integrative web server to predict subcellular localization of proteins.Nucleic Acids Res2018
28812536eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes.BMC Genomics2017
28172591SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments.Bioinformatics2017
28130235ISPRED4: interaction sites PREDiction in protein structures with a refining grammar model.Bioinformatics2017
27153629INPS-MD: a web server to predict stability of protein variants from sequence and structure.Bioinformatics2016
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Collaborators

Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 60
Pier Luigi Martelli
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 58
Olivier Lichtarge
Baylor College of Medicine
Co-authored papers 10
Steven E Brenner
University of California berkeley
Co-authored papers 7
Predrag Radivojac
Indiana University
Co-authored papers 7
Sean D Mooney
University of Washington
Co-authored papers 6
Yana Bromberg
Rutgers University
Co-authored papers 6
John Moult
Institute for Bioscience and Biotechnology Research
Co-authored papers 5
Vikas Pejaver
Institute for Genomic Health, Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Yaoqi Zhou
Co-authored papers 3
Yang Shen
The Second Affiliated Hospital of Nanchang University
Co-authored papers 3
Silvio C E Tosatto
University of Padova
Co-authored papers 3
Giuseppe Profiti
University of Bologna
Co-authored papers 3
Constantina Bakolitsa
University of California berkeley
Co-authored papers 2
Kymberleigh A Pagel
The Institute for Computational Medicine, The Johns Hopkins University
Co-authored papers 2
Yue Cao
Co-authored papers 2
Yuxiang Jiang
Indiana University
Co-authored papers 2
Marco Carraro
Hematology and Clinical Immunology Unit, University of Padova
Co-authored papers 2
Daisuke Kihara
Purdue University
Co-authored papers 2
Roland L Dunbrack
Fox Chase Cancer Center
Co-authored papers 2
Iddo Friedberg
Iowa State University
Co-authored papers 2
Shoshana J Wodak
VIB-VUB Center for Structural Biology
Co-authored papers 1
Magdalena Kotlicka-Antczak
Medical University of Lodz
Co-authored papers 1
Alan J Medlar
Co-authored papers 1
Rui Fa
University College London
Co-authored papers 1
Sabeur Aridhi
Universite de Lorraine, CNRS
Co-authored papers 1
Qizhong Mao
Temple University
Co-authored papers 1
Fabio Fabris
University of Kent
Co-authored papers 1
Wei-Cheng Tseng
Taipei Veterans General Hospital
Co-authored papers 1
Christophe Dessimoz
University of Lausanne
Co-authored papers 1
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