Author details

Full Name

Juan Carlos Rivera-Mulia

Affiliation

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
38009262	Repli-seq Sample Preparation using Cell Sorting with Cell-Permeant Dyes.		2023
36506300	Epigenomic signatures associated with spontaneous and replication stress-induced DNA double strand breaks.		2022
35868255	You shall not pass! Unveiling the barriers for cohesin-mediated loop extrusion.	Molecular Cell	2022
35474001	Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2022
35781769	Optimized Repli-seq: improved DNA replication timing analysis by next-generation sequencing.	Chromosome Research	2022
32728046	An integrative ENCODE resource for cancer genomics.	Nat Commun	2020
32220303	4D Genome Rewiring during Oncogene-Induced and Replicative Senescence.	Mol Cell	2020
32680994	3D genome organization contributes to genome instability at fragile sites.	Nature Communications	2020
32728249	Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2020
31434679	Replication timing networks reveal a link between transcription regulatory circuits and replication timing control.	Genome Research	2019
31698451	Replication timing alterations in leukemia affect clinically relevant chromosome domains.	Blood Adv	2019
30595451	Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.	Cell	2019
30475980	RT States: systematic annotation of the human genome using cell type-specific replication timing programs.	Bioinformatics	2019
31231024	Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment.	Stem Cell Reports	2019
29735606	Allele-specific control of replication timing and genome organization during development.	Genome Research	2018
30202056	Integrative detection and analysis of structural variation in cancer genomes.	Nat Genet	2018
29963964	Cellular senescence induces replication stress with almost no affect on DNA replication timing.	Cell Cycle	2018
29599440	Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.		2018
27996173	The Set of Structural DNA-Nuclear Matrix Interactions in Neurons Is Cell-Type Specific and Rather Independent of Functional Constraints.	Journal of Cellular Biochemistry	2017
28433605	Stability of patient-specific features of altered DNA replication timing in xenografts of primary human acute lymphoblastic leukemia.	Exp Hematol	2017
29357061	Replication Domains: Genome Compartmentalization into Functional Replication Units.	Advances in Experimental Medicine and Biology	2017
29196523	DNA replication timing alterations identify common markers between distinct progeroid diseases.	Proc Natl Acad Sci U S A	2017
27115331	Replication timing and transcriptional control: beyond cause and effect-part III.	Current Opinion in Cell Biology	2016
27259206	Replicating Large Genomes: Divide and Conquer.	Molecular Cell	2016
26587014	Computing interaction probabilities in signaling networks.	Eurasip Journal on Bioinformatics and Systems Biology	2015
26055160	Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells.	Genome Res	2015
26590169	Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing.	Cold Spring Harbor Symposia on Quantitative Biology	2015
24785991	Copy number variation is a fundamental aspect of the placental genome.	PLoS Genet	2014
21244708	DNA moves sequentially towards the nuclear matrix during DNA replication in vivo.	BMC Cell Biology	2011
20047947	Determination of the in vivo structural DNA loop organization in the genomic region of the rat albumin locus by means of a topological approach.	DNA Research	2010