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Author Details

Ivica Letunic
2002
70
50
PMIDPaper TitleJournal TitlePublished Year
37897342SPIRE: a Searchable, Planetary-scale mIcrobiome REsource.Nucleic Acids Res2024
36399505eggNOG 6.0: enabling comparative genomics across 12 535 organisms.Nucleic Acids Res2023
36350672InterPro in 2022.Nucleic Acids Res2023
36408900proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.Nucleic Acids Res2023
35323968Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes.Nucleic Acids Res2022
34912116Towards the biogeography of prokaryotic genes.Nature2022
35017197Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism.Gut2022
35177860Microbiome and metabolome features of the cardiometabolic disease spectrum.Nat Med2022
34880489Combinatorial, additive and dose-dependent drug-microbiome associations.Nature2021
33885785Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.Nucleic Acids Res2021
33156333The InterPro protein families and domains database: 20 years on.Nucleic Acids Res2021
33104802SMART: recent updates, new developments and status in 2020.Nucleic Acids Res2021
34597405eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.Mol Biol Evol2021
31647096proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.Nucleic Acids Res2020
30931475Interactive Tree Of Life (iTOL) v4: recent updates and new developments.Nucleic Acids Res2019
30398656InterPro in 2019: improving coverage, classification and access to protein sequence annotations.Nucleic Acids Res2019
30418610eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.Nucleic Acids Res2019
30655578INSIdE NANO: a systems biology framework to contextualize the mechanism-of-action of engineered nanomaterials.Scientific Reports2019
29718427iPath3.0: interactive pathways explorer v3.Nucleic Acids Res2018
2904068120 years of the SMART protein domain annotation resource.Nucleic Acids Res2018
30056386Metagenomic analysis of gut microbial communities from a Central Asian population.BMJ Open2018
28053165proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes.Nucleic Acids Res2017
27899635InterPro in 2017-beyond protein family and domain annotations.Nucleic Acids Res2017
26481350The SIDER database of drugs and side effects.Nucleic Acids Res2016
27095192Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees.Nucleic Acids Res2016
25300481SMART: recent updates, new developments and status in 2015.Nucleic Acids Res2015
25361965PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins.Nucleic Acids Res2015
25428371The InterPro protein families database: the classification resource after 15 years.Nucleic Acids Res2015
23193284PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins.Nucleic Acids Res2013
22096229InterPro in 2011: new developments in the family and domain prediction database.Nucleic Acids Res2012
22053084SMART 7: recent updates to the protein domain annotation resource.Nucleic Acids Res2012
22096231eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.Nucleic Acids Res2012
21546551iPath2.0: interactive pathway explorer.Nucleic Acids Res2011
21470960Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy.Nucleic Acids Res2011
21407210Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data.Mol Syst Biol2011
20195253Visualization of multiple alignments, phylogenies and gene family evolution.Nature Methods2010
20087340A side effect resource to capture phenotypic effects of drugs.Mol Syst Biol2010
19900971eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.Nucleic Acids Res2010
18953037metaTIGER: a metabolic evolution resource.Nucleic Acids Research2009
19164758Quantifying environmental adaptation of metabolic pathways in metagenomics.Proc Natl Acad Sci U S A2009
19965476Impact of genome reduction on bacterial metabolism and its regulation.Science2009
18849420Discovering functional novelty in metagenomes: examples from light-mediated processes.J Bacteriol2009
18940856InterPro: the integrative protein signature database.Nucleic Acids Res2009
18978020SMART 6: recent updates and new developments.Nucleic Acids Res2009
18273011The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.Nature2008
179165714DXpress: a database for cross-species expression pattern comparisons.Nucleic Acids Res2008
18599463Evolution of the phospho-tyrosine signaling machinery in premetazoan lineages.Proc Natl Acad Sci U S A2008
18276143iPath: interactive exploration of biochemical pathways and networks.Trends Biochem Sci2008
17050570Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.Bioinformatics2007
17202162New developments in the InterPro database.Nucleic Acids Res2007
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