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Author Details

Yoichiro Shibata
Center for Genomic and Computational Biology, Duke University.
2000
30
26
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34294892Fibroblast growth factor receptor 3 alterations and response to immune checkpoint inhibition in metastatic urothelial cancer: a real world experience.Br J Cancer2021
31043422Mammalian SWI/SNF collaborates with a polycomb-associated protein to regulate male germline transcription in the mouse.Development2019
31599933Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach.Genome Biol Evol2019
29608722Comparative Serum Challenges Show Divergent Patterns of Gene Expression and Open Chromatin in Human and Chimpanzee.Genome Biol Evol2018
29932900Spt6 Association with RNA Polymerase II Directs mRNA Turnover During Transcription.Mol Cell2018
30093408IL-1R signaling promotes STAT3 and NF-κB factor recruitment to distal <i>cis</i>-regulatory elements that regulate <i>Il17a/f</i> transcription.J Biol Chem2018
28254491EZH1 in germ cells safeguards the function of PRC2 during spermatogenesis.Dev Biol2017
28087634Genome-wide identification of regulatory elements in Sertoli cells.Development2017
27670941Microgravity induces proteomics changes involved in endoplasmic reticulum stress and mitochondrial protection.Sci Rep2016
26159997Histone H3.3 maintains genome integrity during mammalian development.Genes Dev2015
24415943Deletion of a conserved cis-element in the Ifng locus highlights the role of acute histone acetylation in modulating inducible gene transcription.PLoS Genet2014
22761590Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.PLoS Genet2012
23034120Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity.Genome Biol2012
21750106Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.Genome Res2011
21795386Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration.Genome Res2011
20643337Modular utilization of distal cis-regulatory elements controls Ifng gene expression in T cells activated by distinct stimuli.Immunity2010
20471290Epigenetic instability of cytokine and transcription factor gene loci underlies plasticity of the T helper 17 cell lineage.Immunity2010
19488879Mapping regulatory elements by DNaseI hypersensitivity chip (DNase-Chip).Methods Mol Biol2009
18515193The histone methylase Set2p and the histone deacetylase Rpd3p repress meiotic recombination at the HIS4 meiotic recombination hotspot in Saccharomyces cerevisiae.DNA Repair (Amst)2008
17088384The RNA polymerase II kinase Ctk1 regulates positioning of a 5' histone methylation boundary along genes.Mol Cell Biol2007
17389396CCR4/NOT complex associates with the proteasome and regulates histone methylation.Proc Natl Acad Sci U S A2007
16977311Opposing roles for Set2 and yFACT in regulating TBP binding at promoters.EMBO J2006
15798214A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation.Mol Cell Biol2005
16227595Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide.Mol Cell Biol2005
16040246BUR kinase selectively regulates H3 K4 trimethylation and H2B ubiquitylation through recruitment of the PAF elongation complex.Curr Biol2005
16087749Histone H3 K36 methylation is associated with transcription elongation in Schizosaccharomyces pombe.Eukaryot Cell2005
15247917Evidence for nucleosome depletion at active regulatory regions genome-wide.Nat Genet2004
12629047Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast.Genes Dev2003
11172883Altered distribution of dopaminergic neurons in the brain of L1 null mice.Brain Res Dev Brain Res2001
11020245Complementation of an hMSH2 defect in human colorectal carcinoma cells by human chromosome 2 transfer.Mol Carcinog2000
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Collaborators

Gregory E Crawford
Center for Genomic & Computational Biology, Duke University
Co-authored papers 12
Brian D Strahl
University of North Carolina
Co-authored papers 11
Lingyun Song
Center for Genomic & Computational Biology, Duke University
Co-authored papers 5
Robin D Hatton
University of Alabama at Birmingham
Co-authored papers 4
Terrence S Furey
University of North Carolina at Chapel Hill
Co-authored papers 4
Jason D Lieb
The University of Chicago
Co-authored papers 4
Casey T Weaver
University of Alabama at Birmingham
Co-authored papers 4
Gregory A Wray
Duke University
Co-authored papers 3
Tiaojiang Xiao
National Institute of Diabetes and Digestive and Kidney Diseases
Co-authored papers 3
Bhargavi Rao
National Institute of Environmental Health Sciences
Co-authored papers 3
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 3
Ronald Nicholas Laribee
University of Tennessee Health Science Center
Co-authored papers 3
Nathan Sheffield (CM4AI)
University of Virginia
Co-authored papers 3
Bum-Kyu Lee
Cancer Research Center, University at Albany, State University of New York
Co-authored papers 2
Courtney C Babbitt
University of Massachusetts Amherst, USA University of Massachusetts Amherst
Co-authored papers 2
Vishwanath R Iyer
Indian Institute of Technology Bombay
Co-authored papers 2
Kelby O Kizer
University of North Carolina School of Medicine
Co-authored papers 2
Darin London
Co-authored papers 2
Alok K Tewari
Dana-Farber Cancer Institute, Harvard Medical School
Co-authored papers 2
Jack F Greenblatt
College Street, University of Toronto
Co-authored papers 2
Uwe Ohler
Humboldt University
Co-authored papers 2
Alexias Safi
Center for Genomic and Computational Biology, Duke University Medical Center
Co-authored papers 2
Stephen C J Parker
University of Michigan ann arbor
Co-authored papers 1
Phillip G Febbo
Illumina Inc.
Co-authored papers 1
Michael J Buck
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Co-authored papers 1
Zheng Liu
Chinese Academy of Agricultural Sciences
Co-authored papers 1
James Taylor
Johns Hopkins University
Co-authored papers 1
Manolis Kellis
Massachusetts Institute of Technology
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Zhancheng Zhang
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Release 1.2