Author details

Full Name

Sriram Kosuri

Affiliation

Octant Inc.

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

Prashant Mali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37214829	Discovery and Validation of Context-Dependent Synthetic Mammalian Promoters.	bioRxiv	2023
37532706	A multiplexed bacterial two-hybrid for rapid characterization of protein-protein interactions and iterative protein design.	Nat Commun	2023
35981026	Functional regulatory variants implicate distinct transcriptional networks in dementia.	Science	2022
32511368	SwabExpress: An end-to-end protocol for extraction-free COVID-19 testing.	bioRxiv	2021
34211145	Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples.	Nat Biomed Eng	2021
34286830	SwabExpress: An End-to-End Protocol for Extraction-Free COVID-19 Testing.	Clin Chem	2021
33436562	Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems.	Nat Commun	2021
32603702	Dissection of c-AMP Response Element Architecture by Using Genomic and Episomal Massively Parallel Reporter Assays.	Cell Syst	2020
33303831	Reliable and accurate diagnostics from highly multiplexed sequencing assays.	Sci Rep	2020
33179598	Systematic identification of cis-regulatory variants that cause gene expression differences in a yeast cross.	Elife	2020
29388765	Systematic Dissection of Sequence Elements Controlling Ï¿70 Promoters Using a Genomically Encoded Multiplexed Reporter Assay in Escherichia coli.	Biochemistry	2019
30904378	A Scalable, Multiplexed Assay for Decoding GPCR-Ligand Interactions with RNA Sequencing.	Cell Syst	2019
30503770	A Multiplexed Assay for Exon Recognition Reveals that an Unappreciated Fraction of Rare Genetic Variants Cause Large-Effect Splicing Disruptions.	Mol Cell	2019
29301959	Multiplexed gene synthesis in emulsions for exploring protein functional landscapes.	Science	2018
30052624	Metagenomic mining of regulatory elements enables programmable species-selective gene expression.	Nat Methods	2018
29632376	Highly parallel genome variant engineering with CRISPR-Cas9.	Nat Genet	2018
28911123	A systematic comparison of error correction enzymes by next-generation sequencing.	Nucleic Acids Res	2017
26689263	Engineering an allosteric transcription factor to respond to new ligands.	Nat Methods	2016
24856730	Direct mutagenesis of thousands of genomic targets using microarray-derived oligonucleotides.	ACS Synth Biol	2015
24781323	Large-scale de novo DNA synthesis: technologies and applications.	Nat Methods	2014
23924614	Composability of regulatory sequences controlling transcription and translation in Escherichia coli.	Proc Natl Acad Sci U S A	2013
24072823	Causes and effects of N-terminal codon bias in bacterial genes.	Science	2013
24136967	Probing the limits of genetic recoding in essential genes.	Science	2013
23907171	CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.	Nat Biotechnol	2013
22903519	Next-generation digital information storage in DNA.	Science	2012
25077042	Gene Assembly from Chip-Synthesized Oligonucleotides.	Curr Protoc Chem Biol	2012
23651112	When it rains, it pores.	ACS Synth Biol	2012
21248753	Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription.	Nat Biotechnol	2011
21113165	Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips.	Nat Biotechnol	2010
18093293	TABASCO: A single molecule, base-pair resolved gene expression simulator.	BMC Bioinformatics	2007
16729053	Refactoring bacteriophage T7.	Mol Syst Biol	2005

1 - 31 of 31

George M Church

Wyss Institute for Biologically Inspired Engineering, Harvard University

Career Start Year 2018

Number of shared co-authors 5

George M Church

Harvard Medical School

Career Start Year 2018

Number of shared co-authors 2

Sabine Oesterle

ETH Zurich

Career Start Year 2014

Number of shared co-authors 0

Corey M Hudson

Informatics Institute, University of Missouri

Career Start Year 2011

Number of shared co-authors 0

Marc G??ell

Universitat Pompeu Fabra

Career Start Year 2009

Number of shared co-authors 8

Jason M Peters

School of Pharmacy, University of Wisconsin-Madison

Career Start Year 2009

Number of shared co-authors 0

Hiroyuki Kuwahara

King Abdullah University of Science and Technology (KAUST)

Career Start Year 2008

Number of shared co-authors 0

Nozomu Yachie

The University of British Columbia

Career Start Year 2006

Number of shared co-authors 2

Gang Fang

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 1

Brian Teague

Massachusetts Institute of Technology

Career Start Year 2005

Number of shared co-authors 1

Michael Place

Center for Genomic Science Innovation, University of Wisconsin-Madison

Career Start Year 2004

Number of shared co-authors 1

Stefano Cardinale

Synomics Ltd

Career Start Year 2004

Number of shared co-authors 1

Michael C Jewett

Northwestern University

Career Start Year 2004

Number of shared co-authors 4

Chang C Liu

University of California irvine

Career Start Year 2004

Number of shared co-authors 2

Harm van Bakel

Icahn School of Medicine at Mount Sinai

Career Start Year 2002

Number of shared co-authors 1

Peter L Freddolino

University of Michigan ann arbor

Career Start Year 2002

Number of shared co-authors 1

Eran Segal

Weizmann Institute of Science

Career Start Year 2001

Number of shared co-authors 2

Nathan J Hillson

Lawrence Berkeley National Laboratory

Career Start Year 1999

Number of shared co-authors 2

James M Carothers

Molecular Engineering & Sciences Institute, University of Washington

Career Start Year 1999

Number of shared co-authors 2

Erik van Nimwegen

University of Basel

Career Start Year 1998

Number of shared co-authors 0

Lars M Steinmetz

Stanford University

Career Start Year 1998

Number of shared co-authors 0

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

William J Greenleaf

Stanford University

Career Start Year 1998

Number of shared co-authors 2

Christopher T Workman

Technical University of Denmark

Career Start Year 1995

Number of shared co-authors 1

Stephen R Quake

Stanford University

Career Start Year 1994

Number of shared co-authors 2

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 2

Andreas Gnirke

The Center for Genome Architecture, Baylor College of Medicine

Career Start Year 1986

Number of shared co-authors 0

Richard Bonneau

Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation

Career Start Year 1983

Number of shared co-authors 2

Thomas R Gingeras

Stanley Institute for Cognitive Genomics

Career Start Year 1974

Number of shared co-authors 2

Ronald W Davis

Stanford University

Career Start Year 1968

Number of shared co-authors 1

row(s) 1 - 30 of 30

George M Church

Harvard Medical School

Co-authored papers 12

Rockie Chong

University of California los angeles

Co-authored papers 3

Leonid Kruglyak

Co-authored papers 3

Drew Endy

Stanford University

Co-authored papers 3

Daniel B Goodman

University of California San Francisco

Co-authored papers 3

Mark J Rieder

Co-authored papers 2

Jay Shendure

University of Washington

Co-authored papers 2

Lior Pachter

Co-authored papers 2

Lucille M Rich

Center for Immunity and Immunotherapies, Seattle Children's Research Institute

Co-authored papers 2

Jason S Debley

Seattle Children's Hospital, University of Washington

Co-authored papers 2

Yuan Gao

Johns Hopkins University

Co-authored papers 2

Deborah A Nickerson

University of Washington

Co-authored papers 2

Manish J Butte

University of California Los Angeles

Co-authored papers 1

Adam H Marblestone

Astera Institute

Co-authored papers 1

Eric J Alm

Massachusetts Institute of Technology 21 Ames St. Cambridge

Co-authored papers 1

David Baker

University of Washington

Co-authored papers 1

Giovanni Coppola

David Geffen School of Medicine, University of California los angeles

Co-authored papers 1

Christopher S Smillie

Co-authored papers 1

Prashant Mali (CM4AI)

University of California San Diego

Co-authored papers 1

Rocco Moretti

Co-authored papers 1

Daniel H Geschwind

University of California los angeles

Co-authored papers 1

Eleazar Eskin

Co-authored papers 1

Emily M LeProust

Co-authored papers 1

Luhan Yang

College of Resources and Environment, Southwest University

Co-authored papers 1

Nathan LaPierre

University of California los angeles

Co-authored papers 1

Mark Moosburner

J. Craig Venter Institute

Co-authored papers 1

Stanley Fields

University of Washington

Co-authored papers 1

Omai B Garner

Co-authored papers 1

Roman Jerala

National Institute of Chemistry

Co-authored papers 1

Peter B Stranges

Harvard Medical School

Co-authored papers 1

1 - 30

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