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Author Details

Arcady Mushegian
National Science Foundation
1991
142
53
PMIDPaper TitleJournal TitlePublished Year
36780432Four principles to establish a universal virus taxonomy.PLoS Biol2023
37804442Correction to: Changes to virus taxonomy and the ICTV Statutes ratifed by the International Committee on Taxonomy of Viruses (2023).Arch Virol2023
37373197A Study of a Protein-Folding Machine: Transient Rotation of the Polypeptide Backbone Facilitates Rapid Folding of Protein Domains in All-Atom Molecular Dynamics Simulations.Int J Mol Sci2023
37141106Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV).J Gen Virol2023
37296227Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2023).Arch Virol2023
35086479Florigen and its homologs of FT/CETS/PEBP/RKIP/YbhB family may be the enzymes of small molecule metabolism: review of the evidence.BMC Plant Biol2022
36748479Guidance for creating individual and batch latinized binomial virus species names.J Gen Virol2022
35999326Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022).Arch Virol2022
36139088Methyltransferases of <i>Riboviria</i>.Biomolecules2022
35043230Differentiating between viruses and virus species by writing their names correctly.Arch Virol2022
35008947Is Protein Folding a Thermodynamically Unfavorable, Active, Energy-Dependent Process?Int J Mol Sci2022
34940844Yearlong COVID-19 Infection Reveals Within-Host Evolution of SARS-CoV-2 in a Patient With B-Cell Depletion.J Infect Dis2022
34231026Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021).Arch Virol2021
33633838Energy-dependent protein folding: modeling how a protein folding machine may work.F1000Res2021
34642697Year-long COVID-19 infection reveals within-host evolution of SARS-CoV-2 in a patient with B cell depletion.medRxiv2021
32284351An ancient evolutionary connection between Ribonuclease A and EndoU families.RNA2020
31797129Binomial nomenclature for virus species: a consultation.Arch Virol2020
32065315Correction to: Binomial nomenclature for virus species: a consultation.Arch Virol2020
32816125Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020).Arch Virol2020
32611703RNAs That Behave Like Prions.mSphere2020
30663020Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).Arch Virol2019
31438841Measuring similarity between gene interaction profiles.BMC Bioinformatics2019
31187277Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019).Arch Virol2019
31152249Michael Adams: new life member of the International Committee on Taxonomy of Viruses (ICTV).Arch Virol2019
29065352Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to "Megavirales".Virology2018
29980221Modeling protein folding in vivo.Biol Direct2018
29754305Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).Arch Virol2018
27798405Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials.Syst Biol2017
28434098Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).Arch Virol2017
2807847550 years of the International Committee on Taxonomy of Viruses: progress and prospects.Arch Virol2017
28569180Rotational restriction of nascent peptides as an essential element of co-translational protein folding: possible molecular players and structural consequences.Biol Direct2017
27524491Changes in the composition of the RNA virome mark evolutionary transitions in green plants.BMC Biol2016
27906033The role of the backbone torsion in protein folding.Biol Direct2016
27424026Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2016).Arch Virol2016
25576984Evolution of plant virus movement proteins from the 30K superfamily and of their homologs integrated in plant genomes.Virology2015
25919787Prokaryotic genes in eukaryotic genome sequences: when to infer horizontal gene transfer and when to suspect an actual microbe.Environ Microbiol2015
25841004Distinct circular single-stranded DNA viruses exist in different soil types.Appl Environ Microbiol2015
25374149Chordopoxvirus protein F12 implicated in enveloped virion morphogenesis is an inactivated DNA polymerase.Biol Direct2014
22827264Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep.Environ Microbiol2013
24354654Models of gene gain and gene loss for probabilistic reconstruction of gene content in the last universal common ancestor of life.Biol Direct2013
23873957Minimal genome encoding proteins with constrained amino acid repertoire.Nucleic Acids Res2013
23995941Genome sequence analysis indicates that the model eukaryote Nematostella vectensis harbors bacterial consorts.Appl Environ Microbiol2013
23222723Orthologous gene clusters and taxon signature genes for viruses of prokaryotes.J Bacteriol2013
23332158NleB, a bacterial effector with glycosyltransferase activity, targets GAPDH function to inhibit NF-κB activation.Cell Host Microbe2013
21903131G protein-coupled receptor kinases: more than just kinases and not only for GPCRs.Pharmacol Ther2012
22984288Human family with sequence similarity 60 member A (FAM60A) protein: a new subunit of the Sin3 deacetylase complex.Mol Cell Proteomics2012
22442725The origin and evolution of G protein-coupled receptor kinases.PLoS One2012
22345504A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component.Mol Cell Proteomics2012
21166560A polynomial-time algorithm computing lower and upper bounds of the rooted subtree prune and regraft distance.J Comput Biol2011
22303355Grand challenges in bioinformatics and computational biology.Front Genet2011
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Collaborators

Jens H Kuhn
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 16
Peer Bork
University of Wurzburg
Co-authored papers 7
Robert Curtis Hendrickson
University of Alabama at Birmingham
Co-authored papers 6
Manisha Goel
University of Delhi South Campus
Co-authored papers 6
Alexander E Gorbalenya
Leiden University Medical Center
Co-authored papers 5
Kathy R Foltz
Cellular and Developmental Biology and Marine Science Institute
Co-authored papers 3
Elodie Ghedin
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 3
Anthony J Robertson
Present address: King Abdullah University of Science and Technology
Co-authored papers 3
Michelle M Roux
St. Petersburg College
Co-authored papers 3
James A Coffman
University of Maine
Co-authored papers 3
Lavanya Kannan
NYU School of Medicine
Co-authored papers 3
Thierry Lepage
Institut Biology Valrose, Universite Cote d'Azur
Co-authored papers 2
Maria Ina Arnone
CTO Hospital
Co-authored papers 2
Francesca Rizzo
University of Salerno and Genome Research Center for Health
Co-authored papers 2
Anne-Marie Genevi??re
Sorbonne Universite, CNRS
Co-authored papers 2
Mariano Loza-Coll
California State University
Co-authored papers 2
Hemant Kelkar
University of North Carolina at Chapel Hill
Co-authored papers 2
Gerard Manning
Genentech Inc.
Co-authored papers 2
Wendy S Beane
Western Michigan University
Co-authored papers 2
Fran??ois Lapraz
Universite Cote d'Azur, CNRS, Inserm
Co-authored papers 2
David R McClay
Duke University
Co-authored papers 2
Michael Raisch
Duke University Medical Center
Co-authored papers 2
Julia Morales
CNRS, Sorbonne Universite
Co-authored papers 2
Christian Gache
Sorbonne Universite, CNRS
Co-authored papers 2
Emmie de Wit
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 2
Ian K Townley
University of New Orleans
Co-authored papers 2
Cynthia A Bradham
Boston University
Co-authored papers 2
Mark S Boguski
Precision Medicine Network Inc.
Co-authored papers 1
Sham V Nair
Macquarie University
Co-authored papers 1
Annamaria Locascio
Instituto Cajal
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Release 1.2