Author details

Full Name

Jun'ichi Tsujii

Affiliation

ORCID

Career Start Year

1998

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
31419946	Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries.	BMC Bioinformatics	2019
31865903	Improving clinical named entity recognition in Chinese using the graphical and phonetic feature.	BMC Medical Informatics and Decision Making	2019
30105604	Annotation and detection of drug effects in text for pharmacovigilance.	Journal of Cheminformatics	2018
26202570	Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.	BMC Bioinformatics	2015
25956056	Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary.	BMC Bioinformatics	2015
25093067	Generalising semantic category disambiguation with large lexical resources for fun and profit.	Journal of Biomedical Semantics	2014
25343498	Anatomical entity recognition with a hierarchical framework augmented by external resources.	PLoS ONE	2014
23934949	Joint segmentation and named entity recognition using dual decomposition in Chinese discharge summaries.	Journal of the American Medical Informatics Association : JAMIA	2014
23467472	An end-to-end system to identify temporal relation in discharge summaries: 2012 i2b2 challenge.	Journal of the American Medical Informatics Association : JAMIA	2013
23874426	Building large collections of Chinese and English medical terms from semi-structured and encyclopedia websites.	PLoS ONE	2013
23289130	Proximity-based frameworks for generating embeddings from multi-output data.		2012
22759456	Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011.	BMC Bioinformatics	2012
22759455	The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011.	BMC Bioinformatics	2012
22505762	A classification approach to coreference in discharge summaries: 2011 i2b2 challenge.	Journal of the American Medical Informatics Association : JAMIA	2012
22586067	Feature engineering combined with machine learning and rule-based methods for structured information extraction from narrative clinical discharge summaries.	Journal of the American Medical Informatics Association : JAMIA	2012
22962484	Event extraction across multiple levels of biological organization.		2012
22879758	Suicide note sentiment classification: a supervised approach augmented by web data.		2012
22771530	Named entity recognition of follow-up and time information in 20,000 radiology reports.	Journal of the American Medical Informatics Association : JAMIA	2012
23157272	Improving protein coreference resolution by simple semantic classification.	BMC Bioinformatics	2012
21685059	Discovering and visualizing indirect associations between biomedical concepts.		2011
21349873	AGRA: analysis of gene ranking algorithms.		2011
21468321	Named entity recognition for bacterial Type IV secretion systems.	PLoS ONE	2011
21633495	Using workflows to explore and optimise named entity recognition for chemistry.	PLoS ONE	2011
22177292	U-Compare bio-event meta-service: compatible BioNLP event extraction services.	BMC Bioinformatics	2011
22166595	Event extraction for DNA methylation.	Journal of Biomedical Semantics	2011
21821664	Automatic extraction of angiogenesis bioprocess from text.	Bioinformatics	2011
21687783	Mining metabolites: extracting the yeast metabolome from the literature.	Metabolomics	2011
22166173	An analysis of gene/protein associations at PubMed scale.	Journal of Biomedical Semantics	2011
20183879	Event extraction with complex event classification using rich features.	Journal of Bioinformatics and Computational Biology	2010
20981895	A re-evaluation of biomedical named entity-term relations.	Journal of Bioinformatics and Computational Biology	2010
20981894	Improving the inter-corpora compatibility for protein annotations.	Journal of Bioinformatics and Computational Biology	2010
20709690	Text mining meets workflow: linking U-Compare with Taverna.		2010
20529932	Complex event extraction at PubMed scale.	Bioinformatics	2010
20529930	PathText: a text mining integrator for biological pathway visualizations.		2010
20570001	Event extraction for systems biology by text mining the literature.	Trends Biotechnol	2010
20053840	Disambiguating the species of biomedical named entities using natural language parsers.		2010
20671316	Extracting protein interactions from text with the unified AkaneRE event extraction system.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2010
20360059	Building a high-quality sense inventory for improved abbreviation disambiguation.		2010
19995463	Investigating heterogeneous protein annotations toward cross-corpora utilization.	BMC Bioinformatics	2009
19501018	Protein-protein interaction extraction by leveraging multiple kernels and parsers.	International Journal of Medical Informatics	2009
19073593	Evaluating contributions of natural language parsers to protein-protein interaction extraction.		2009
19414535	U-Compare: share and compare text mining tools with UIMA.	Bioinformatics	2009
18229720	Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example.		2008
19025694	Accelerating the annotation of sparse named entities by dynamic sentence selection.	BMC Bioinformatics	2008
19025685	Themes in biomedical natural language processing: BioNLP08.	BMC Bioinformatics	2008
18426550	New challenges for text mining: mapping between text and manually curated pathways.	BMC Bioinformatics	2008
18182099	Corpus annotation for mining biomedical events from literature.	BMC Bioinformatics	2008
18772154	FACTA: a text search engine for finding associated biomedical concepts.		2008
17698493	Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.		2007
17094223	Extraction of gene-disease relations from Medline using domain dictionaries and machine learning.		2006