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Author Details

Gustavo Stolovitzky
IBM T.J. Watson Research Center
1990
145
49
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35047007Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop.Front Genet2022
35663013Extracellular vesicles carry distinct proteo-transcriptomic signatures that are different from their cancer cell of origin.iScience2022
35047007Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop.Front Genet2022
35663013Extracellular vesicles carry distinct proteo-transcriptomic signatures that are different from their cancer cell of origin.iScience2022
33241320COSIFER: a Python package for the consensus inference of molecular interaction networks.Bioinformatics2021
33745882Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data.EBioMedicine2021
34146471A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.Cell Syst2021
34195686Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth.Cell Rep Med2021
34321221Unannotated small RNA clusters associated with circulating extracellular vesicles detect early stage liver cancer.Gut2021
34083538Crowdsourced mapping of unexplored target space of kinase inhibitors.Nat Commun2021
33241320COSIFER: a Python package for the consensus inference of molecular interaction networks.Bioinformatics2021
34413191The Fermi-Dirac distribution provides a calibrated probabilistic output for binary classifiers.Proc Natl Acad Sci U S A2021
33745882Evaluation of artificial intelligence systems for assisting neurologists with fast and accurate annotations of scalp electroencephalography data.EBioMedicine2021
34413191The Fermi-Dirac distribution provides a calibrated probabilistic output for binary classifiers.Proc Natl Acad Sci U S A2021
34321221Unannotated small RNA clusters associated with circulating extracellular vesicles detect early stage liver cancer.Gut2021
34146471A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery.Cell Syst2021
34195686Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth.Cell Rep Med2021
34083538Crowdsourced mapping of unexplored target space of kinase inhibitors.Nat Commun2021
32119094Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms.JAMA Netw Open2020
31905016R/PY-SUMMA: An R/Python Package for Unsupervised Ensemble Learning for Binary Classification Problems in Bioinformatics.J Comput Biol2020
32119094Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms.JAMA Netw Open2020
31941899Intratumoral heterogeneity and clonal evolution in liver cancer.Nat Commun2020
32972997Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data.Life Sci Alliance2020
32844655Deterministic Lateral Displacement: Challenges and Perspectives.ACS Nano2020
32945258The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies.Elife2020
31905016R/PY-SUMMA: An R/Python Package for Unsupervised Ensemble Learning for Binary Classification Problems in Bioinformatics.J Comput Biol2020
31941899Intratumoral heterogeneity and clonal evolution in liver cancer.Nat Commun2020
32945258The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies.Elife2020
32972997Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data.Life Sci Alliance2020
32844655Deterministic Lateral Displacement: Challenges and Perspectives.ACS Nano2020
30920559Gel-on-a-chip: continuous, velocity-dependent DNA separation using nanoscale lateral displacement.Lab Chip2019
31506535NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers.Sci Rep2019
31506093Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges.Genome Biol2019
30920559Gel-on-a-chip: continuous, velocity-dependent DNA separation using nanoscale lateral displacement.Lab Chip2019
30899020Mitochondrial origins of fractional control in regulated cell death.Nat Commun2019
31209238Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.Nat Commun2019
30951672exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.Cell2019
31324891Leveraging crowdsourcing to accelerate global health solutions.Nat Biotechnol2019
31324891Leveraging crowdsourcing to accelerate global health solutions.Nat Biotechnol2019
31209238Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.Nat Commun2019
31506535NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers.Sci Rep2019
31506093Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges.Genome Biol2019
30899020Mitochondrial origins of fractional control in regulated cell death.Nat Commun2019
30951672exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.Cell2019
29218865Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology.Pac Symp Biocomput2018
30400818Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection.Genome Biol2018
30468237Integrated nanoscale deterministic lateral displacement arrays for separation of extracellular vesicles from clinically-relevant volumes of biological samples.Lab Chip2018
29218865Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology.Pac Symp Biocomput2018
30400818Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection.Genome Biol2018
30468237Integrated nanoscale deterministic lateral displacement arrays for separation of extracellular vesicles from clinically-relevant volumes of biological samples.Lab Chip2018
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Collaborators

Andrea Califano
Columbia University
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Thea Norman
Bill & Melinda Gates Foundation
Co-authored papers 19
Stephen H Friend
University of Oxford
Co-authored papers 17
Julio Saez-Rodriguez
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Co-authored papers 15
John J Rice
Co-authored papers 15
Mehmet Eren Ahsen
Gies College of Business, University of Illinois at Urbana-Champaign.
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Raquel Norel
IBM T.J. Watson Research Center
Co-authored papers 14
Adam A Margolin
Icahn School of Medicine
Co-authored papers 10
Justin Guinney
University of Washington
Co-authored papers 10
Michael R Kellen
University of Washington
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University of Michigan ann arbor
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Institute for Cancer Genetics, Columbia University
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University of California at Santa Cruz
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Thomas Yu
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Erhan Bilal
ProtATonce Ltd, National Technical University of Athens
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Children's Hospital Oakland Research Institute
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Julia Hoeng
Vectura Fertin Pharma
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James C Costello
University of Colorado Anschutz Medical Campus
Co-authored papers 7
James Christopher Bare
Institute for Systems Biology
Co-authored papers 7
Guanghua Xiao
The University of Texas Southwestern Medical Center
Co-authored papers 6
Bruce Hoff
Hughes Research Laboratories
Co-authored papers 6
Kyle Ellrott
Oregon Health & Science University
Co-authored papers 6
Yang Xie
Quantitative Biomedical Research Center
Co-authored papers 6
Tero Aittokallio
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Co-authored papers 6
Tao Wang
University of Texas Southwestern Medical Center
Co-authored papers 6
Guillermo A Cecchi
IBM T.J. Watson Research Center
Co-authored papers 6
Arnold J Levine
Simons Center for Systems Biology, Institute for Advanced Study
Co-authored papers 5
Manolis Kellis
Massachusetts Institute of Technology
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Release 1.2