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Author Details

Jean M Davidson
Stanford University School of Medicine
2009
21
12
PMIDPaper TitleJournal TitlePublished Year
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
33398137Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2021
34536702Reducing variability of breast cancer subtype predictors by grounding deep learning models in prior knowledge.Comput Biol Med2021
34536702Reducing variability of breast cancer subtype predictors by grounding deep learning models in prior knowledge.Comput Biol Med2021
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
33037424Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.Nature2020
31478310Yield of whole exome sequencing in undiagnosed patients facing insurance coverage barriers to genetic testing.J Genet Couns2019
31478310Yield of whole exome sequencing in undiagnosed patients facing insurance coverage barriers to genetic testing.J Genet Couns2019
29126249The Encyclopedia of DNA elements (ENCODE): data portal update.Nucleic Acids Res2018
29478781Biallelic Mutations in ATP5F1D, which Encodes a Subunit of ATP Synthase, Cause a Metabolic Disorder.Am J Hum Genet2018
29126249The Encyclopedia of DNA elements (ENCODE): data portal update.Nucleic Acids Res2018
29688363Prevention of data duplication for high throughput sequencing repositories.Database (Oxford)2018
29688363Prevention of data duplication for high throughput sequencing repositories.Database (Oxford)2018
29478781Biallelic Mutations in ATP5F1D, which Encodes a Subunit of ATP Synthase, Cause a Metabolic Disorder.Am J Hum Genet2018
29515757SWI/SNF aberrations sensitize pancreatic cancer cells to DNA crosslinking agents.Oncotarget2017
28403240SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.PLoS One2017
29515757SWI/SNF aberrations sensitize pancreatic cancer cells to DNA crosslinking agents.Oncotarget2017
28403240SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.PLoS One2017
26980513Principles of metadata organization at the ENCODE data coordination center.Database (Oxford)2016
26990993Resources for the Comprehensive Discovery of Functional RNA Elements.Mol Cell2016
26980513Principles of metadata organization at the ENCODE data coordination center.Database (Oxford)2016
26527727ENCODE data at the ENCODE portal.Nucleic Acids Res2016
26527727ENCODE data at the ENCODE portal.Nucleic Acids Res2016
26990993Resources for the Comprehensive Discovery of Functional RNA Elements.Mol Cell2016
25776021Ontology application and use at the ENCODE DCC.Database (Oxford)2015
25776021Ontology application and use at the ENCODE DCC.Database (Oxford)2015
26556242Integrative Genomics Implicates EGFR as a Downstream Mediator in NKX2-1 Amplified Non-Small Cell Lung Cancer.PLoS One2015
26556242Integrative Genomics Implicates EGFR as a Downstream Mediator in NKX2-1 Amplified Non-Small Cell Lung Cancer.PLoS One2015
22916021S phase-coupled E2f1 destruction ensures homeostasis in proliferating tissues.PLoS Genet2012
22916021S phase-coupled E2f1 destruction ensures homeostasis in proliferating tissues.PLoS Genet2012
21870294Using Drosophila S2 cells to measure S phase-coupled protein destruction via flow cytometry.Methods Mol Biol2011
21870294Using Drosophila S2 cells to measure S phase-coupled protein destruction via flow cytometry.Methods Mol Biol2011
19808889Real-time measurements of cAMP production in live Dictyostelium cells.J Cell Sci2009
19997601Loss of the histone pre-mRNA processing factor stem-loop binding protein in Drosophila causes genomic instability and impaired cellular proliferation.PLoS One2009
19884253Endoreplication: polyploidy with purpose.Genes Dev2009
19808889Real-time measurements of cAMP production in live Dictyostelium cells.J Cell Sci2009
19884253Endoreplication: polyploidy with purpose.Genes Dev2009
19997601Loss of the histone pre-mRNA processing factor stem-loop binding protein in Drosophila causes genomic instability and impaired cellular proliferation.PLoS One2009
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Collaborators

J Michael Cherry
Stanford University
Co-authored papers 10
J Seth Strattan
Co-authored papers 8
Benjamin C Hitz
Stanford University School of Medicine
Co-authored papers 8
Eurie L Hong
Stanford University School of Medicine
Co-authored papers 7
Idan Gabdank
Co-authored papers 7
Brian T Lee
Genomics Institute, University of California Santa Cruz
Co-authored papers 6
Venkat S Malladi
UT Southwestern Medical Center
Co-authored papers 6
Stuart R Miyasato
Stanford University
Co-authored papers 6
Jason A Hilton
Co-authored papers 4
Otto Jolanki
Co-authored papers 4
Diane Trout
Co-authored papers 4
Eric Rynes
Altius Institute for Biomedical Sciences
Co-authored papers 2
Andre Wildberg
University of California
Co-authored papers 2
Yoko Fukuda
Co-authored papers 2
Brandon J Mannion
Co-authored papers 2
Erez Lieberman Aiden
Co-authored papers 2
Ah Young Lee
Co-authored papers 2
Carrie A Davis
Stanford University
Co-authored papers 2
Ingrid Plajzer-Frick
Co-authored papers 2
Anshul Kundaje
Stanford University.
Co-authored papers 2
David U Gorkin
Center for Epigenomics, University of California San Diego
Co-authored papers 2
Len A Pennacchio
Lawrence Berkeley National Laboratory
Co-authored papers 2
Joshua Chiou
Co-authored papers 2
Martin Hirst
University of British Columbia
Co-authored papers 2
Veena Afzal
Co-authored papers 2
Diane E Dickel
Co-authored papers 2
Yuan Zhao
Co-authored papers 2
Simon Heath
Barcelona Institute of Science and Technology (BIST)
Co-authored papers 2
Euan A Ashley
Stanford University
Co-authored papers 2
Elizabeth A Lee
Co-authored papers 2
Release 1.2