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Author Details

Daisuke Kuroda
The University of Tokyo
1992
134
29
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36346585Structural Classification of CDR-H3 in Single-Domain V<sub>H</sub>H Antibodies.Methods Mol Biol2023
36346585Structural Classification of CDR-H3 in Single-Domain V<sub>H</sub>H Antibodies.Methods Mol Biol2023
37916305Conformational features and interaction mechanisms of V<sub>H</sub> H antibodies with β-hairpin CDR3: A case of Nb8-HigB2 interaction.Protein Sci2023
37820452Biophysical insight into protein-protein interactions in the Interleukin-11/Interleukin-11Rα/glycoprotein 130 signaling complex.Biochem Biophys Res Commun2023
37556494Structural basis for cross-group recognition of an influenza virus hemagglutinin antibody that targets postfusion stabilized epitope.PLoS Pathog2023
37550885Arginine cluster introduction on framework region in anti-lysozyme antibody improved association rate constant by changing conformational diversity of CDR loops.Protein Sci2023
37154259An Engineered Synthetic Receptor-Aptamer Pair for an Artificial Signal Transduction System.ACS Nano2023
37081068Molecular mechanism underlying the increased risk of colorectal cancer metastasis caused by single nucleotide polymorphisms in LI-cadherin gene.Sci Rep2023
37330175Targeting hemoglobin receptors IsdH and IsdB of Staphylococcus aureus with a single VHH antibody inhibits bacterial growth.J Biol Chem2023
37452031Structural delineation and computational design of SARS-CoV-2-neutralizing antibodies against Omicron subvariants.Nat Commun2023
36944530A case of accessory hepatic duct entering cystic duct successfully treated by laparoscopic cholecystectomy for cholecystolithiasis.Asian J Endosc Surg2023
37531208Modulation of a conformational ensemble by a small molecule that inhibits key protein-protein interactions involved in cell adhesion.Protein Sci2023
37916305Conformational features and interaction mechanisms of V<sub>H</sub> H antibodies with β-hairpin CDR3: A case of Nb8-HigB2 interaction.Protein Sci2023
37556494Structural basis for cross-group recognition of an influenza virus hemagglutinin antibody that targets postfusion stabilized epitope.PLoS Pathog2023
37550885Arginine cluster introduction on framework region in anti-lysozyme antibody improved association rate constant by changing conformational diversity of CDR loops.Protein Sci2023
37820452Biophysical insight into protein-protein interactions in the Interleukin-11/Interleukin-11Rα/glycoprotein 130 signaling complex.Biochem Biophys Res Commun2023
37531208Modulation of a conformational ensemble by a small molecule that inhibits key protein-protein interactions involved in cell adhesion.Protein Sci2023
37154259An Engineered Synthetic Receptor-Aptamer Pair for an Artificial Signal Transduction System.ACS Nano2023
37452031Structural delineation and computational design of SARS-CoV-2-neutralizing antibodies against Omicron subvariants.Nat Commun2023
37081068Molecular mechanism underlying the increased risk of colorectal cancer metastasis caused by single nucleotide polymorphisms in LI-cadherin gene.Sci Rep2023
36944530A case of accessory hepatic duct entering cystic duct successfully treated by laparoscopic cholecystectomy for cholecystolithiasis.Asian J Endosc Surg2023
37330175Targeting hemoglobin receptors IsdH and IsdB of Staphylococcus aureus with a single VHH antibody inhibits bacterial growth.J Biol Chem2023
35104168Current advances in biopharmaceutical informatics: guidelines, impact and challenges in the computational developability assessment of antibody therapeutics.MAbs2022
36307795Preoperative serum CA19-9 predicts postoperative pancreatic fistula in PDAC patients: retrospective analysis at a single institution.BMC Surg2022
36153698Molecular basis for thermal stability and affinity in a VHH: Contribution of the framework region and its influence in the conformation of the CDR3.Protein Sci2022
36335195ACE2 N-glycosylation modulates interactions with SARS-CoV-2 spike protein in a site-specific manner.Commun Biol2022
35993969Residue-based program of a β-peptoid twisted strand shape <i>via</i> a cyclopentane constraint.Org Biomol Chem2022
35399172Distance of Peritoneum to Inferior Mesenteric Artery Predicts the Operation Time During Laparoscopic Colectomy for Sigmoid or Rectosigmoid Colon Cancer.Cancer Diagn Progn2022
35104168Current advances in biopharmaceutical informatics: guidelines, impact and challenges in the computational developability assessment of antibody therapeutics.MAbs2022
35088931Oligo(N-methylalanine) as a Peptide-Based Molecular Scaffold with a Minimal Structure and High Density of Functionalizable Sites.Angew Chem Int Ed Engl2022
35329724Simple Methods for Evaluating Acid Permeation and Biofilm Formation Behaviors on Polysiloxane Films.Materials (Basel)2022
35120469Taking antithrombic therapy during emergency laparoscopic cholecystectomy for acute cholecystitis does not affect the postoperative outcomes: a propensity score matched study.BMC Surg2022
35399172Distance of Peritoneum to Inferior Mesenteric Artery Predicts the Operation Time During Laparoscopic Colectomy for Sigmoid or Rectosigmoid Colon Cancer.Cancer Diagn Progn2022
36335195ACE2 N-glycosylation modulates interactions with SARS-CoV-2 spike protein in a site-specific manner.Commun Biol2022
36307795Preoperative serum CA19-9 predicts postoperative pancreatic fistula in PDAC patients: retrospective analysis at a single institution.BMC Surg2022
35993969Residue-based program of a β-peptoid twisted strand shape <i>via</i> a cyclopentane constraint.Org Biomol Chem2022
36153698Molecular basis for thermal stability and affinity in a VHH: Contribution of the framework region and its influence in the conformation of the CDR3.Protein Sci2022
35120469Taking antithrombic therapy during emergency laparoscopic cholecystectomy for acute cholecystitis does not affect the postoperative outcomes: a propensity score matched study.BMC Surg2022
35088931Oligo(N-methylalanine) as a Peptide-Based Molecular Scaffold with a Minimal Structure and High Density of Functionalizable Sites.Angew Chem Int Ed Engl2022
35329724Simple Methods for Evaluating Acid Permeation and Biofilm Formation Behaviors on Polysiloxane Films.Materials (Basel)2022
33303630Structural basis for antigen recognition by methylated lysine-specific antibodies.J Biol Chem2021
34058475Anion solvation enhanced by positive supercharging mutations preserves thermal stability of an antibody in a wide pH range.Biochem Biophys Res Commun2021
33621080Thermodynamic Dissection of Potency and Selectivity of Cytosolic Hsp90 Inhibitors.J Med Chem2021
33881223Purse-string suture after ligating by endoloop for closing of the appendiceal stump is an alternative for endostapler in selected cases: A propensity score-matched study.Asian J Endosc Surg2021
33303630Structural basis for antigen recognition by methylated lysine-specific antibodies.J Biol Chem2021
34631338Microsecond molecular dynamics suggest that a non-synonymous mutation, frequently observed in patients with mild symptoms in Tokyo, alters dynamics of the SARS-CoV-2 main protease.Biophys Physicobiol2021
34777747Peptoid-based reprogrammable template for cell-permeable inhibitors of protein-protein interactions.Chem Sci2021
34663870Delicate balance among thermal stability, binding affinity, and conformational space explored by single-domain V<sub>H</sub>H antibodies.Sci Rep2021
34493804Regulation of cadherin dimerization by chemical fragments as a trigger to inhibit cell adhesion.Commun Biol2021
34364873Mechanism of dimerization and structural features of human LI-cadherin.J Biol Chem2021
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Collaborators

Jeffrey J Gray
Johns Hopkins University
Co-authored papers 10
Nicholas A Marze
Johns Hopkins University
Co-authored papers 4
Richard Bonneau
Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation
Co-authored papers 3
Jianqing Xu
Co-authored papers 3
Haruki Nakamura
Institute for Protein Research, Osaka University
Co-authored papers 3
Jeliazko R Jeliazkov
Co-authored papers 3
Ora Schueler-Furman
Co-authored papers 2
Tanja Kortemme
University of California san francisco
Co-authored papers 2
Rhiju Das
Stanford University School of Medicine
Co-authored papers 2
Michael S Pacella
Co-authored papers 2
Roland L Dunbrack
Fox Chase Cancer Center
Co-authored papers 2
Brian G Pierce
University of Maryland Institute for Bioscience and Biotechnology Research
Co-authored papers 2
Brian Kuhlman
Co-authored papers 2
Zhiping Weng
University of Massachusetts Medical School
Co-authored papers 1
Eiichiro Ichiishi
International University of Health and Welfare (IUHV Hospital)
Co-authored papers 1
Anisah W Ghoorah
University of Mauritius
Co-authored papers 1
Neil J Bruce
Heidelberg Institute for Theoretical Studies (HITS)
Co-authored papers 1
Zhiwei Ma
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 1
Dmitri Beglov
Boston University
Co-authored papers 1
Kala Bharath Pilla
Quantitative Biology Institute, University of California san francisco
Co-authored papers 1
Sagar D Khare
The State University of New Jersey
Co-authored papers 1
Liming Qiu
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
Noah Ollikainen
California Institute of Technology
Co-authored papers 1
Krishna Praneeth Kilambi
Co-authored papers 1
Artem B Mamonov
MGH/Harvard Medical School
Co-authored papers 1
Brian Jim??nez-Garc??a
Utrecht University
Co-authored papers 1
Iain H Moal
GSK Medicines Research Centre
Co-authored papers 1
Rebecca C Wade
Center for Molecular Biology (ZMBH), Heidelberg University
Co-authored papers 1
Jooyoung Lee
Korea Institute for Advanced Study
Co-authored papers 1
Bernard Maigret
Universite de Lorraine, CNRS
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Release 1.2