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Author Details

Benjamin Webb
University of California san francisco
2004
41
29
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36420884RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.Nucleic Acids Res2023
36828268ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models.J Mol Biol2023
35149213Integration of software tools for integrative modeling of biomolecular systems.J Struct Biol2022
33125654Protein Structure Modeling with MODELLER.Methods Mol Biol2021
34866606New system for archiving integrative structures.Acta Crystallogr D Struct Biol2021
33166013Using Integrative Modeling Platform to compute, validate, and archive a model of a protein complex structure.Protein Sci2021
31278630Archiving and disseminating integrative structure models.J Biomol NMR2019
31780431Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.Structure2019
31396911Modeling Biological Complexes Using Integrative Modeling Platform.Methods Mol Biol2019
28960548Integrative structure modeling with the Integrative Modeling Platform.Protein Sci2018
29657133Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules.Structure2018
29531293Proteome-wide mapping of immune features onto Plasmodium protein three-dimensional structures.Sci Rep2018
28986782Protein Structure Modeling with MODELLER.Methods Mol Biol2017
27322406Comparative Protein Structure Modeling Using MODELLER.Curr Protoc Bioinformatics2016
27801516Comparative Protein Structure Modeling Using MODELLER.Curr Protoc Protein Sci2016
24203340Modeling of proteins and their assemblies with the Integrative Modeling Platform.Methods Mol Biol2014
25199792Comparative Protein Structure Modeling Using MODELLER.Curr Protoc Bioinformatics2014
24573470Protein structure modeling with MODELLER.Methods Mol Biol2014
24365937SAXS Merge: an automated statistical method to merge SAXS profiles using Gaussian processes.J Synchrotron Radiat2014
24271400ModBase, a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2014
23624438Design of a single-chain polypeptide tetrahedron assembled from coiled-coil segments.Nat Chem Biol2013
24078704Optimized atomic statistical potentials: assessment of protein interfaces and loops.Bioinformatics2013
21963794UCSF Chimera, MODELLER, and IMP: an integrated modeling system.J Struct Biol2012
23112201Assembly of macromolecular complexes by satisfaction of spatial restraints from electron microscopy images.Proc Natl Acad Sci U S A2012
22618536SALIGN: a web server for alignment of multiple protein sequences and structures.Bioinformatics2012
22272186Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies.PLoS Biol2012
22323229Macromolecular assembly structures by comparative modeling and electron microscopy.Methods Mol Biol2012
21097780ModBase, a database of annotated comparative protein structure models, and associated resources.Nucleic Acids Res2011
21877292Modeling of proteins and their assemblies with the integrative modeling platform.Methods Mol Biol2011
21715383MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map.Nucleic Acids Res2011
20507923Integrative structure modeling of macromolecular assemblies from proteomics data.Mol Cell Proteomics2010
18948282MODBASE, a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2009
19845314Molecular docking screens using comparative models of proteins.J Chem Inf Model2009
19587024Alignment of multiple protein structures based on sequence and structure features.Protein Eng Des Sel2009
18275820Protein structure fitting and refinement guided by cryo-EM density.Structure2008
18542861Protein structure modeling with MODELLER.Methods Mol Biol2008
18694757Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies.J Mol Biol2008
18429317Comparative protein structure modeling using MODELLER.Curr Protoc Protein Sci2007
16381869MODBASE: a database of annotated comparative protein structure models and associated resources.Nucleic Acids Res2006
18428767Comparative protein structure modeling using Modeller.Curr Protoc Bioinformatics2006
14681398MODBASE, a database of annotated comparative protein structure models, and associated resources.Nucleic Acids Res2004
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Collaborators

University of California San Francisco
Co-authored papers 41
The Hebrew University of Jerusalem
Co-authored papers 10
The Scripps Research Institute
Co-authored papers 9
University of California san francisco
Co-authored papers 8
Indian Institute of Science Education and Research Pune
Co-authored papers 7
University of California at San Francisco
Co-authored papers 7
University of California san francisco
Co-authored papers 6
University of California san francisco
Co-authored papers 6
Institute for Quantitative Biomedicine, State University of New Jersey
Co-authored papers 6
Universitat Pompeu Fabra (UPF)
Co-authored papers 6
The State University of New Jersey
Co-authored papers 6
University of California san francisco
Co-authored papers 6
Department of Pharmaceutical Chemistry, University of California San Francisco
Co-authored papers 5
University of California at San Francisco
Co-authored papers 5
The State University of New Jersey
Co-authored papers 5
National Chung Hsing University
Co-authored papers 4
University of California San Francisco
Co-authored papers 4
The State University of New Jersey
Co-authored papers 4
University of California san francisco
Co-authored papers 3
National Center for Biological Sciences, Tata Institute of Fundamental Research
Co-authored papers 3
Howard Hughes Medical Institute
Co-authored papers 3
Department of Pharmaceutical Chemistry, University of California San Francisco
Co-authored papers 3
Institute for Quantitative Biomedicine, State University of New Jersey
Co-authored papers 3
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 3
and Clinical & Translational Science Institute, University of Pittsburgh
Co-authored papers 3
University of California San Francisco
Co-authored papers 3
Korea Advanced Institute of Science and Technology (KAIST)
Co-authored papers 3
CNRS UMR 5086 and Universite Claude Bernard Lyon 1
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College of Biotechnology and Bioengineering, Zhejiang University of Technology
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Tel Aviv University
Co-authored papers 2