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Author Details

Bin Zhang
Massachusetts Institute of Technology
2010
41
23
PMIDPaper TitleJournal TitlePublished Year
37034777Microphase Separation Produces Interfacial Environment within Diblock Biomolecular Condensates.bioRxiv2024
37496267Efficient Hi-C inversion facilitates chromatin folding mechanism discovery and structure prediction.Biophys J2023
34536913Unifying coarse-grained force fields for folded and disordered proteins.Curr Opin Struct Biol2022
35410381BRD2 compartmentalizes the accessible genome.Nat Genet2022
35858189Phase Separation and Correlated Motions in Motorized Genome.J Phys Chem B2022
35484234Single-stranded nucleic acid binding and coacervation by linker histone H1.Nat Struct Mol Biol2022
37065433Molecular Determinants for the Layering and Coarsening of Biological Condensates.Aggregate (Hoboken)2022
36029149Chromatin fiber breaks into clutches under tension and crowding.Nucleic Acids Res2022
33417594On the role of transcription in positioning nucleosomes.PLoS Comput Biol2021
33719449DeepBAR: A Fast and Exact Method for Binding Free Energy Computation.J Phys Chem Lett2021
33826337Consistent Force Field Captures Homologue-Resolved HP1 Phase Separation.J Chem Theory Comput2021
33597548Stability and folding pathways of tetra-nucleosome from six-dimensional free energy surface.Nat Commun2021
34819511Chromatin network retards nucleoli coalescence.Nat Commun2021
34241389Multiscale modeling of genome organization with maximum entropy optimization.J Chem Phys2021
34057467Cooperative DNA looping by PRC2 complexes.Nucleic Acids Res2021
32544330Structure and Dynamics of N-Glycosylated Human Ribonuclease 1.Biochemistry2020
31756104Maximum Entropy Optimized Force Field for Intrinsically Disordered Proteins.J Chem Theory Comput2020
33143418Computing Absolute Free Energy with Deep Generative Models.J Phys Chem B2020
33086041Data-Driven Polymer Model for Mechanistic Exploration of Diploid Genome Organization.Biophys J2020
33208532Single-molecule and in silico dissection of the interaction between Polycomb repressive complex 2 and chromatin.Proc Natl Acad Sci U S A2020
32688511Quantifying epigenetic stability with minimum action paths.Phys Rev E2020
32986691Characterizing chromatin folding coordinate and landscape with deep learning.PLoS Comput Biol2020
32841603Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer.Cell2020
30620594Improving Coarse-Grained Protein Force Fields with Small-Angle X-ray Scattering Data.J Phys Chem B2019
31809105Theory of Active Chromatin Remodeling.Phys Rev Lett2019
31675892Path-accelerated stochastic molecular dynamics: Parallel-in-time integration using path integrals.J Chem Phys2019
31181064Predicting three-dimensional genome organization with chromatin states.PLoS Comput Biol2019
31091895Critical role of histone tail entropy in nucleosome unwinding.J Chem Phys2019
31053260Learning the Formation Mechanism of Domain-Level Chromatin States with Epigenomics Data.Biophys J2019
27692923Genomic Energy Landscapes.Biophys J2017
27367409Shape Transitions and Chiral Symmetry Breaking in the Energy Landscape of the Mitotic Chromosome.Phys Rev Lett2016
27688758Transferable model for chromosome architecture.Proc Natl Acad Sci U S A2016
27685351Molecular Mechanism of Facilitated Dissociation of Fis Protein from DNA.J Am Chem Soc2016
27300314Exploring the Free Energy Landscape of Nucleosomes.J Am Chem Soc2016
27524616A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency.Cell Rep2016
25918364Topology, structures, and energy landscapes of human chromosomes.Proc Natl Acad Sci U S A2015
26408961Regulation of multispanning membrane protein topology via post-translational annealing.Elife2015
24946805Stem cell differentiation as a many-body problem.Proc Natl Acad Sci U S A2014
22852862Direct simulation of early-stage Sec-facilitated protein translocation.J Am Chem Soc2012
23084746Long-timescale dynamics and regulation of Sec-facilitated protein translocation.Cell Rep2012
20203009Hydrophobically stabilized open state for the lateral gate of the Sec translocon.Proc Natl Acad Sci U S A2010
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Collaborators

Andrew P Latham
Massachusetts Institute of Technology, University of California, San Francisco, University of Notre Dame
Co-authored papers 9
Xingcheng Lin
Massachusetts Institute of Technology
Co-authored papers 5
Xinqiang Ding
Massachusetts Institute of Technology
Co-authored papers 4
Shixin Liu
The Rockefeller University
Co-authored papers 3
Rachel Leicher
The Rockefeller University
Co-authored papers 3
Bradley E Bernstein
Broad Institute of MIT and Harvard
Co-authored papers 2
Paul G Young
Tri-Institutional MD-PhD Program
Co-authored papers 1
Songtao Ye
Institute of Natural Sciences, Westlake Institute for Advanced Study
Co-authored papers 1
Gabriella N L Chua
The Rockefeller University
Co-authored papers 1
Tuan Nguyen
The Rockefeller University
Co-authored papers 1
Erez Lieberman Aiden
Co-authored papers 1
Nir Hacohen
Broad Institute of MIT and Harvard
Co-authored papers 1
Adewola Osunsade
Tri-Institutional PhD Program in Chemical Biology
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Ronald T Raines
Massachusetts Institute of Technology
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Xin Zhang
Co-authored papers 1
Yotam Drier
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Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center (MSKCC)
Co-authored papers 1
Dina A Sharon
Massachusetts Institute of Technology
Co-authored papers 1
Howard Y Chang
Center for Personal Dynamic Regulomes, Stanford University
Co-authored papers 1
Adam P Willard
Massachusetts Institute of Technology
Co-authored papers 1
Longchen Zhu
Co-authored papers 1
Noam Shoresh
Co-authored papers 1
Yifeng Qi
Massachusetts Institute of Technology
Co-authored papers 1
Rafael A Irizarry
Dana-Farber Cancer Institute
Co-authored papers 1
Sophia Christodoulou-Rubalcava
Tri-Institutional PhD Program in Chemical Biology
Co-authored papers 1
Sowmya Iyer
Co-authored papers 1
Valerie T Ressler
Promega Corporation
Co-authored papers 1
John W Watters
The Rockefeller University
Co-authored papers 1
Yael David
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Henry R Kilgore
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Release 1.2