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Author Details

Daniel E Carlin
University of California San Diego
2013
19
12
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37228113Hierarchical association of COPD to principal genetic components of biological systems.PLoS One2023
37607543Circadian modulation by time-restricted feeding rescues brain pathology and improves memory in mouse models of Alzheimer's disease.Cell Metab2023
37228113Hierarchical association of COPD to principal genetic components of biological systems.PLoS One2023
37607543Circadian modulation by time-restricted feeding rescues brain pathology and improves memory in mouse models of Alzheimer's disease.Cell Metab2023
34162224Unveiling Complexity and Multipotentiality of Early Heart Fields.Circ Res2021
34162224Unveiling Complexity and Multipotentiality of Early Heart Fields.Circ Res2021
31022372Strategies for Network GWAS Evaluated Using Classroom Crowd Science.Cell Syst2019
31647918Strategies for Network GWAS Evaluated Using Classroom Crowd Science.Cell Syst2019
31174177A Fast and Flexible Framework for Network-Assisted Genomic Association.iScience2019
31022372Strategies for Network GWAS Evaluated Using Classroom Crowd Science.Cell Syst2019
31647918Strategies for Network GWAS Evaluated Using Classroom Crowd Science.Cell Syst2019
31174177A Fast and Flexible Framework for Network-Assisted Genomic Association.iScience2019
29605183Systematic Evaluation of Molecular Networks for Discovery of Disease Genes.Cell Syst2018
29908887The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine.J Mol Biol2018
29608663pyNBS: a Python implementation for network-based stratification of tumor mutations.Bioinformatics2018
29605183Systematic Evaluation of Molecular Networks for Discovery of Disease Genes.Cell Syst2018
29908887The Emerging Potential for Network Analysis to Inform Precision Cancer Medicine.J Mol Biol2018
29608663pyNBS: a Python implementation for network-based stratification of tumor mutations.Bioinformatics2018
28815022Modeling of RAS complexes supports roles in cancer for less studied partners.BMC Biophys2017
28815022Modeling of RAS complexes supports roles in cancer for less studied partners.BMC Biophys2017
28988802A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines.Cell Syst2017
29023449Network propagation in the cytoscape cyberinfrastructure.PLoS Comput Biol2017
29211761Prophetic Granger Causality to infer gene regulatory networks.PLoS One2017
28988802A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines.Cell Syst2017
29023449Network propagation in the cytoscape cyberinfrastructure.PLoS Comput Biol2017
29211761Prophetic Granger Causality to infer gene regulatory networks.PLoS One2017
26901648Inferring causal molecular networks: empirical assessment through a community-based effort.Nat Methods2016
26960204Pathway-Based Genomics Prediction using Generalized Elastic Net.PLoS Comput Biol2016
26901648Inferring causal molecular networks: empirical assessment through a community-based effort.Nat Methods2016
27499020Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer.Cell2016
27499020Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer.Cell2016
26960204Pathway-Based Genomics Prediction using Generalized Elastic Net.PLoS Comput Biol2016
26061751Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.N Engl J Med2015
26095048Functionally Distinct Subsets of Lineage-Biased Multipotent Progenitors Control Blood Production in Normal and Regenerative Conditions.Cell Stem Cell2015
26061751Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.N Engl J Med2015
26095048Functionally Distinct Subsets of Lineage-Biased Multipotent Progenitors Control Blood Production in Normal and Regenerative Conditions.Cell Stem Cell2015
23986566Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE).Bioinformatics2013
23986566Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE).Bioinformatics2013
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Collaborators

Joshua M Stuart
University of California at Santa Cruz
Co-authored papers 8
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 8
Evan O Paull
Columbia University Irving Medical Center
Co-authored papers 7
Artem Sokolov
Harvard Medical School
Co-authored papers 4
Kiley Graim
University of Florida.
Co-authored papers 3
Samson H Fong
University of California San Diego
Co-authored papers 3
Kivilcim Ozturk
Department of Pharmaceutical Technology, Faculty of Pharmacy, Hacettepe University
Co-authored papers 3
Justin K Huang
The University of Texas MD Anderson Cancer Center
Co-authored papers 3
Christopher K Wong
University of California
Co-authored papers 3
Adrian Bivol
University of California
Co-authored papers 3
Hannah Carter
University of California San Diego
Co-authored papers 2
Fan Zhu
Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences
Co-authored papers 2
Sam Ng
University of Adelaide
Co-authored papers 2
Kyle Ellrott
Oregon Health & Science University
Co-authored papers 2
Tongqiu Jia
University of California San Diego
Co-authored papers 2
David Haussler
Genomics Institute, University of California Santa Cruz
Co-authored papers 2
Vladislav Uzunangelov
University of California
Co-authored papers 2
Yuanfang Guan
University of Michigan ann arbor
Co-authored papers 2
Thea Norman
Bill & Melinda Gates Foundation
Co-authored papers 2
Dexter Pratt (CM4AI)
UC San Diego
Co-authored papers 2
Yulia Newton
University of California, Santa Cruz Genomics Institute
Co-authored papers 2
Gordon B Mills
Knight Cancer Institute, Oregon Health and Sciences University
Co-authored papers 2
Gustavo Stolovitzky
IBM T.J. Watson Research Center
Co-authored papers 2
Jeffrey Roach
Co-authored papers 1
Sylvia M Evans
University of California at San Diego
Co-authored papers 1
Phillip Lai
Co-authored papers 1
Wenbin Liu
Co-authored papers 1
Mary McGraw
Co-authored papers 1
Harshad S Mahadeshwar
The University of MD Anderson Cancer Center
Co-authored papers 1
Jianhua Zhang
University of Texas MD Anderson Cancer Center
Co-authored papers 1
Release 1.2