Author details

Full Name

Chenyi Xue

Affiliation

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37502836	High-Dimensional Single-Cell Multimodal Landscape of Human Carotid Atherosclerosis.	medRxiv	2023
36656640	Effect of mechanical unloading on genome-wide DNA methylation profile of the failing human heart.	JCI Insight	2023
36945644	Atherosclerosis is a smooth muscle cell-driven tumor-like disease.	bioRxiv	2023
36546321	Human Macrophage Long Intergenic Noncoding RNA, <i>SIMALR</i>, Suppresses Inflammatory Macrophage Apoptosis via NTN1 (Netrin-1).	Arterioscler Thromb Vasc Biol	2023
34890852	Adipocyte-specific tribbles pseudokinase 1 regulates plasma adiponectin and plasma lipids in mice.	Mol Metab	2022
36566259	A genome-wide CRISPR screen identifies WDFY3 as a regulator of macrophage efferocytosis.		2022
35017681	Cis-regulated expression of non-conserved lincRNAs associates with cardiometabolic related traits.	J Hum Genet	2022
33176448	Nonconserved Long Intergenic Noncoding RNAs Associate With Complex Cardiometabolic Disease Traits.	Arterioscler Thromb Vasc Biol	2021
33630758	Deficiency of macrophage PHACTR1 impairs efferocytosis and promotes atherosclerotic plaque necrosis.	J Clin Invest	2021
33731931	The AIM2 inflammasome exacerbates atherosclerosis in clonal haematopoiesis.	Nature	2021
32962412	Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human.	Circulation	2020
32392242	ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing.	PLoS Genet	2020
30537374	Differentiation of Human-Induced Pluripotent Stem Cells to Macrophages for Disease Modeling and Functional Genomics.	Current Protocols in Stem Cell Biology	2019
30571184	Tissue-Specific Differential Expression of Novel Genes and Long Intergenic Noncoding RNAs in Humans With Extreme Response to Evoked Endotoxemia.	Circ Genom Precis Med	2018
29925637	Interrogation of nonconserved human adipose lincRNAs identifies a regulatory role of <i>linc-ADAL</i> in adipocyte metabolism.	Sci Transl Med	2018
28125622	Expression of Calgranulin Genes S100A8, S100A9 and S100A12 Is Modulated by n-3 PUFA during Inflammation in Adipose Tissue and Mononuclear Cells.	PLoS One	2017
28389524	De novo RNA sequence assembly during in vivo inflammatory stress reveals hundreds of unannotated lincRNAs in human blood CD14<sup>+</sup> monocytes and in adipose tissue.	Physiol Genomics	2017
28882870	CRISPR/Cas9-Mediated Gene Editing in Human iPSC-Derived Macrophage Reveals Lysosomal Acid Lipase Function in Human Macrophages-Brief Report.	Arterioscler Thromb Vasc Biol	2017
29133519	Deep RNA Sequencing Uncovers a Repertoire of Human Macrophage Long Intergenic Noncoding RNAs Modulated by Macrophage Activation and Associated With Cardiometabolic Diseases.	J Am Heart Assoc	2017
27818196	Distinct functions of PPARÎ³ isoforms in regulating adipocyte plasticity.	Biochem Biophys Res Commun	2016
26839278	NuSAP governs chromosome oscillation by facilitating the Kid-generated polar ejection force.	Nature Communications	2016
27288454	Genome-wide interrogation reveals hundreds of long intergenic noncoding RNAs that associate with cardiometabolic traits.	Hum Mol Genet	2016
27013693	Common and Rare Genetic Variation in CCR2, CCR5, or CX3CR1 and Risk of Atherosclerotic Coronary Heart Disease and Glucometabolic Traits.	Circ Cardiovasc Genet	2016
27012629	Adipose tissue RNASeq reveals novel gene-nutrient interactions following n-3 PUFA supplementation and evoked inflammation in humans.	J Nutr Biochem	2016
27230130	Transcriptome-Wide Analysis Reveals Modulation of Human Macrophage Inflammatory Phenotype Through Alternative Splicing.	Arterioscler Thromb Vasc Biol	2016
25995365	Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1.	Proc Natl Acad Sci U S A	2015
25416278	Integrative genomics identifies 7p11.2 as a novel locus for fever and clinical stress response in humans.	Hum Mol Genet	2015
25904599	Functional analysis and transcriptomic profiling of iPSC-derived macrophages and their application in modeling Mendelian disease.	Circ Res	2015
25721208	Identification of crucial genes in intracranial aneurysm based on weighted gene coexpression network analysis.	Cancer Gene Therapy	2015
26400545	The long noncoding RNA landscape in hypoxic and inflammatory renal epithelial injury.	Am J Physiol Renal Physiol	2015
24507775	Whole-exome sequencing identifies rare and low-frequency coding variants associated with LDL cholesterol.	Am J Hum Genet	2014
24362841	PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution.	Nucleic Acids Res	2014
24504737	Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases.	Arterioscler Thromb Vasc Biol	2014
24941081	Loss-of-function mutations in APOC3, triglycerides, and coronary disease.	N Engl J Med	2014
25089931	A functional synonymous coding variant in the IL1RN gene is associated with survival in septic shock.	Am J Respir Crit Care Med	2014
23826166	Evaluating the impact of sequencing depth on transcriptome profiling in human adipose.	PLoS One	2013
21818345	Why does the giant panda eat bamboo? A comparative analysis of appetite-reward-related genes among mammals.	PLoS One	2011
20957285	The activity and expression of microRNAs in prostate cancers.	Mol Biosyst	2010
21155023	Racial differences in MLH1 and MSH2 mutation: an analysis of yellow race and white race based on the InSiGHT database.	J Bioinform Comput Biol	2010