Author details

Full Name

Jaap Heringa

Affiliation

VU University Amsterdam

ORCID

Career Start Year

1991

Papers

115

H Index

Expertise

CM4AI Collaborator

Timothy Clark (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37658060	Applying federated learning to combat food fraud in food supply chains.	NPJ Sci Food	2023
37857631	Author Correction: Applying federated learning to combat food fraud in food supply chains.	NPJ Sci Food	2023
37658060	Applying federated learning to combat food fraud in food supply chains.	NPJ Sci Food	2023
37857631	Author Correction: Applying federated learning to combat food fraud in food supply chains.	NPJ Sci Food	2023
35150231	PIPENN: protein interface prediction from sequence with an ensemble of neural nets.	Bioinformatics	2022
36347868	Towards a knowledge graph for pre-/probiotics and microbiota-gut-brain axis diseases.	Sci Rep	2022
36334560	Tumour break load is a biologically relevant feature of genomic instability with prognostic value in colorectal cancer.	Eur J Cancer	2022
35150231	PIPENN: protein interface prediction from sequence with an ensemble of neural nets.	Bioinformatics	2022
36334560	Tumour break load is a biologically relevant feature of genomic instability with prognostic value in colorectal cancer.	Eur J Cancer	2022
36347868	Towards a knowledge graph for pre-/probiotics and microbiota-gut-brain axis diseases.	Sci Rep	2022
33262885	Predicting the relationships between gut microbiota and mental disorders with knowledge graphs.	Health Inf Sci Syst	2020
33262885	Predicting the relationships between gut microbiota and mental disorders with knowledge graphs.	Health Inf Sci Syst	2020
28968694	Bioinformatics in the Netherlands: the value of a nationwide community.	Brief Bioinform	2019
28968694	Bioinformatics in the Netherlands: the value of a nationwide community.	Brief Bioinform	2019
31520075	Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022.	Nat Rev Genet	2019
31083661	The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern.	PLoS Comput Biol	2019
31455890	Leveraging European infrastructures to access 1 million human genomes by 2022.	Nat Rev Genet	2019
31116381	SeRenDIP: SEquential REmasteriNg to DerIve profiles for fast and accurate predictions of PPI interface positions.	Bioinformatics	2019
31368486	Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit.	Bioinformatics	2019
30890711	Addendum: The FAIR Guiding Principles for scientific data management and stewardship.	Sci Data	2019
31520075	Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022.	Nat Rev Genet	2019
31455890	Leveraging European infrastructures to access 1 million human genomes by 2022.	Nat Rev Genet	2019
31368486	Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit.	Bioinformatics	2019
30890711	Addendum: The FAIR Guiding Principles for scientific data management and stewardship.	Sci Data	2019
31116381	SeRenDIP: SEquential REmasteriNg to DerIve profiles for fast and accurate predictions of PPI interface positions.	Bioinformatics	2019
31083661	The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern.	PLoS Comput Biol	2019
29267862	Bioinformatics in the Netherlands: the value of a nationwide community.	Brief Bioinform	2018
30383764	Motif-Aware PRALINE: Improving the alignment of motif regions.	PLoS Comput Biol	2018
29950011	Training for translation between disciplines: a philosophy for life and data sciences curricula.	Bioinformatics	2018
29267862	Bioinformatics in the Netherlands: the value of a nationwide community.	Brief Bioinform	2018
29760449	Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer.	Sci Rep	2018
29950011	Training for translation between disciplines: a philosophy for life and data sciences curricula.	Bioinformatics	2018
30383764	Motif-Aware PRALINE: Improving the alignment of motif regions.	PLoS Comput Biol	2018
29760449	Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer.	Sci Rep	2018
28073761	Seeing the trees through the forest: sequence-based homo- and heteromeric protein-protein interaction sites prediction using random forest.	Bioinformatics	2017
28450744	Bridging the translational innovation gap through good biomarker practice.	Nat Rev Drug Discov	2017
29123641	Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data.	F1000Res	2017
28073761	Seeing the trees through the forest: sequence-based homo- and heteromeric protein-protein interaction sites prediction using random forest.	Bioinformatics	2017
27896722	Multiple Sequence Alignment.	Methods Mol Biol	2017
28159843	Both Intrinsic Substrate Preference and Network Context Contribute to Substrate Selection of Classical Tyrosine Phosphatases.	J Biol Chem	2017
28159843	Both Intrinsic Substrate Preference and Network Context Contribute to Substrate Selection of Classical Tyrosine Phosphatases.	J Biol Chem	2017
28450744	Bridging the translational innovation gap through good biomarker practice.	Nat Rev Drug Discov	2017
29123641	Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data.	F1000Res	2017
27896722	Multiple Sequence Alignment.	Methods Mol Biol	2017
26721389	ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.	Nucleic Acids Res	2016
26978244	The FAIR Guiding Principles for scientific data management and stewardship.	Sci Data	2016
27218469	Construction and Experimental Validation of a Petri Net Model of Wnt/Î²-Catenin Signaling.	PLoS One	2016
27166787	CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.	PLoS One	2016
26721389	ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.	Nucleic Acids Res	2016
27307645	BioASF: a framework for automatically generating executable pathway models specified in BioPAX.	Bioinformatics	2016

1 - 50 of 230

L??szl?? Kaj??n

TUM (Technische Universitat Munchen)

Career Start Year 2003

Number of shared co-authors 0

Narcis Fernandez-Fuentes

Institute of Biological, Aberystwyth University

Career Start Year 2002

Number of shared co-authors 1

Silvio C E Tosatto

University of Padova

Career Start Year 2002

Number of shared co-authors 10

Julian Gough

Medical Research Council Laboratory of Molecular Biology

Career Start Year 2001

Number of shared co-authors 9

Kevin Bryson

University of Glasgow

Career Start Year 1999

Number of shared co-authors 2

Marc A Marti-Renom

Universitat Pompeu Fabra (UPF)

Career Start Year 1998

Number of shared co-authors 4

Daron M Standley

Osaka university

Career Start Year 1998

Number of shared co-authors 3

Iddo Friedberg

Iowa State University

Career Start Year 1997

Number of shared co-authors 6

Lukasz Jaroszewski

University of California Riverside School of Medicine

Career Start Year 1995

Number of shared co-authors 0

Alex Bateman

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1995

Number of shared co-authors 9

Bonnie Berger

Massachusetts Institute of Technology

Career Start Year 1994

Number of shared co-authors 1

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 16

Valentin A Ilyin

Carnegie Mellon University Qatar

Career Start Year 1992

Number of shared co-authors 0

Burkhard Rost

Technical University of Munich (TUM)

Career Start Year 1992

Number of shared co-authors 7

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 3

Robert B Russell

Heidelberg University

Career Start Year 1991

Number of shared co-authors 4

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 4

Baldo Oliva

Universitat Pompeu Fabra

Career Start Year 1991

Number of shared co-authors 3

Dietlind L Gerloff

Foundation for Applied Molecular Evolution (FfAME)

Career Start Year 1991

Number of shared co-authors 0

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 3

Ramanathan Sowdhamini

Indian Institute of Science

Career Start Year 1989

Number of shared co-authors 0

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 17

Adam Godzik

University of California Riverside

Career Start Year 1987

Number of shared co-authors 3

Liisa Holm

Institute of Biotechnology, University of Helsinki

Career Start Year 1986

Number of shared co-authors 2

Chris Sander

Broad Institute of MIT and Harvard

Career Start Year 1979

Number of shared co-authors 8

Michael J E Sternberg

Imperial College London

Career Start Year 1976

Number of shared co-authors 2

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Career Start Year 1975

Number of shared co-authors 2

Rita Casadio

Department of Pharmacy and Biotechnology, University of Bologna

Career Start Year 1974

Number of shared co-authors 7

Shoba Ranganathan

Macquarie University

Career Start Year 1972

Number of shared co-authors 6

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 1

row(s) 1 - 30 of 30

Rob Hooft van Huijsduijnen

Vrije Universiteit Amsterdam (VU)

Co-authored papers 5

Kuang Lin

Co-authored papers 5

Johannes H G M van Beek

Co-authored papers 5

Gerrit A Meijer

The Netherlands Cancer Institute

Co-authored papers 5

Niklas Blomberg

Universitat Tubingen, Institut fur Arbeitsmedizin

Co-authored papers 5

Barend Mons

Leiden University Medical Center

Co-authored papers 5

Jan-Willem Boiten

Foundation Lygature

Co-authored papers 4

Ruben G Kok

Dutch Techcenter for the Life Sciences

Co-authored papers 4

Bengt Persson

Karolinska Institutet

Co-authored papers 4

Morris A Swertz

University of Groningen, University Medical Center Groningen

Co-authored papers 4

Remond J A Fijneman

The Netherlands Cancer Institute

Co-authored papers 4

Jordi Rambla

Universitat Pompeu Fabra

Co-authored papers 4

Serena Scollen

Pfizer Ltd

Co-authored papers 3

Richard Finkers

Wageningen University and Research

Co-authored papers 2

Gary Saunders

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 2

Mark Thompson

Leiden University Medical Center

Co-authored papers 2

Rajaram Kaliyaperumal

Leiden University Medical Center

Co-authored papers 2

Thierry Sengstag

University of Basel

Co-authored papers 2

Angela Page

Broad Institute

Co-authored papers 2

Youri Hoogstrate

Erasmus MC Cancer Institute

Co-authored papers 2

Olivier Dumon

Co-authored papers 2

Thomas M Keane

European Bioinformatics Institute

Co-authored papers 2

S??ren Brunak

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Co-authored papers 2

Johan van der Lei

Erasmus Medical Center

Co-authored papers 2

Carole Goble

University of Manchester

Co-authored papers 2

Scott C Edmunds

BGI Hong Kong Tech Co Ltd.

Co-authored papers 2

Peter Wittenburg

Co-authored papers 2

Ilkka Lappalainen

European Bioinformatics Institute

Co-authored papers 2

Katherine Wolstencroft

Leiden Institute of Advanced Computer Science, Leiden University

Co-authored papers 2

Albert Mons

Co-authored papers 2

1 - 30

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